Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0463 and Rru_A0464 are separated by 57 nucleotides Rru_A0464 and Rru_A0465 are separated by 42 nucleotides Rru_A0465 and Rru_A0466 are separated by 103 nucleotides
Rru_A0463: Rru_A0463 - Alanine racemase-like (NCBI), at 543,399 to 544,469
_A0463
Rru_A0464: Rru_A0464 - hypothetical protein (NCBI), at 544,527 to 545,348
_A0464
Rru_A0465: Rru_A0465 - Phosphoserine phosphatase SerB (NCBI), at 545,391 to 546,290
_A0465
Rru_A0466: Rru_A0466 - tRNA isopentenyltransferase (NCBI), at 546,394 to 547,374
_A0466
Position (kb) 545
546
547 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 544.402 kb on + strand at 544.402 kb on + strand at 544.402 kb on + strand at 544.402 kb on + strand at 544.402 kb on + strand at 544.403 kb on - strand at 544.403 kb on - strand at 544.403 kb on - strand at 544.403 kb on - strand at 544.403 kb on - strand at 544.512 kb on - strand at 544.746 kb on - strand, within Rru_A0464 at 544.746 kb on - strand, within Rru_A0464 at 544.793 kb on + strand, within Rru_A0464 at 544.793 kb on + strand, within Rru_A0464 at 544.794 kb on - strand, within Rru_A0464 at 544.794 kb on - strand, within Rru_A0464 at 544.794 kb on - strand, within Rru_A0464 at 545.058 kb on + strand, within Rru_A0464 at 545.058 kb on + strand, within Rru_A0464 at 545.058 kb on + strand, within Rru_A0464 at 545.058 kb on + strand, within Rru_A0464 at 545.059 kb on - strand, within Rru_A0464 at 545.059 kb on - strand, within Rru_A0464 at 545.059 kb on - strand, within Rru_A0464 at 545.059 kb on - strand, within Rru_A0464 at 545.059 kb on - strand, within Rru_A0464 at 545.059 kb on - strand, within Rru_A0464 at 545.157 kb on + strand, within Rru_A0464 at 545.157 kb on + strand, within Rru_A0464 at 545.334 kb on + strand at 545.334 kb on + strand at 545.334 kb on + strand at 545.334 kb on + strand at 545.334 kb on + strand at 545.335 kb on - strand at 545.335 kb on - strand at 545.335 kb on - strand at 545.335 kb on - strand at 545.335 kb on - strand at 545.392 kb on + strand at 545.392 kb on + strand at 545.393 kb on - strand at 546.382 kb on + strand at 546.383 kb on - strand at 546.387 kb on + strand at 546.387 kb on + strand at 546.387 kb on + strand at 546.388 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 544,402 + +0.3 544,402 + -3.8 544,402 + -0.2 544,402 + +0.0 544,402 + -0.3 544,403 - -0.1 544,403 - +0.1 544,403 - -1.0 544,403 - -1.4 544,403 - +0.5 544,512 - +0.0 544,746 - Rru_A0464 0.27 +0.8 544,746 - Rru_A0464 0.27 -0.8 544,793 + Rru_A0464 0.32 -3.1 544,793 + Rru_A0464 0.32 -1.2 544,794 - Rru_A0464 0.32 -1.3 544,794 - Rru_A0464 0.32 -0.9 544,794 - Rru_A0464 0.32 +0.6 545,058 + Rru_A0464 0.65 -0.6 545,058 + Rru_A0464 0.65 -0.2 545,058 + Rru_A0464 0.65 -2.6 545,058 + Rru_A0464 0.65 -1.4 545,059 - Rru_A0464 0.65 +0.7 545,059 - Rru_A0464 0.65 +0.2 545,059 - Rru_A0464 0.65 +0.9 545,059 - Rru_A0464 0.65 -0.6 545,059 - Rru_A0464 0.65 -0.6 545,059 - Rru_A0464 0.65 +1.0 545,157 + Rru_A0464 0.77 +2.4 545,157 + Rru_A0464 0.77 +2.3 545,334 + -2.0 545,334 + -0.9 545,334 + -3.3 545,334 + +1.0 545,334 + +0.6 545,335 - +0.0 545,335 - -2.5 545,335 - -1.7 545,335 - -1.2 545,335 - -3.2 545,392 + -0.9 545,392 + -2.4 545,393 - -1.8 546,382 + +0.6 546,383 - -1.9 546,387 + -0.8 546,387 + -1.6 546,387 + +0.4 546,388 - +2.0
Or see this region's nucleotide sequence