Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0436 and Rru_A0437 are separated by 215 nucleotides Rru_A0437 and Rru_A0438 are separated by 264 nucleotides
Rru_A0436: Rru_A0436 - hypothetical protein (NCBI), at 511,373 to 511,891
_A0436
Rru_A0437: Rru_A0437 - OmpA family protein (NCBI), at 512,107 to 513,129
_A0437
Rru_A0438: Rru_A0438 - Multi-sensor Signal Transduction Histidine Kinase (NCBI), at 513,394 to 516,138
_A0438
Position (kb) 512
513
514 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 511.189 kb on - strand at 511.189 kb on - strand at 511.889 kb on + strand at 512.108 kb on + strand at 513.041 kb on + strand at 513.146 kb on - strand at 513.146 kb on - strand at 513.246 kb on + strand at 513.247 kb on - strand at 513.255 kb on - strand at 513.255 kb on - strand at 513.280 kb on - strand at 513.395 kb on + strand at 513.395 kb on + strand at 513.395 kb on + strand at 513.510 kb on + strand at 513.540 kb on + strand at 513.541 kb on - strand at 513.541 kb on - strand at 513.541 kb on - strand at 513.542 kb on + strand at 513.543 kb on - strand at 513.543 kb on - strand at 513.549 kb on + strand at 513.550 kb on - strand at 513.550 kb on - strand at 513.754 kb on - strand, within Rru_A0438 at 513.785 kb on + strand, within Rru_A0438 at 513.786 kb on - strand, within Rru_A0438 at 513.786 kb on - strand, within Rru_A0438 at 513.786 kb on - strand, within Rru_A0438 at 513.786 kb on - strand, within Rru_A0438 at 513.881 kb on + strand, within Rru_A0438 at 513.881 kb on + strand, within Rru_A0438 at 513.882 kb on - strand, within Rru_A0438 at 513.882 kb on - strand, within Rru_A0438 at 513.882 kb on - strand, within Rru_A0438
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 511,189 - +0.5 511,189 - +0.0 511,889 + -0.8 512,108 + -1.2 513,041 + +2.0 513,146 - -2.1 513,146 - +0.5 513,246 + +2.0 513,247 - -1.6 513,255 - -2.1 513,255 - -0.1 513,280 - -2.6 513,395 + -0.3 513,395 + -1.7 513,395 + -3.4 513,510 + -1.6 513,540 + +0.4 513,541 - -1.6 513,541 - +0.2 513,541 - -1.9 513,542 + -1.4 513,543 - +1.6 513,543 - +1.3 513,549 + +1.4 513,550 - +0.3 513,550 - -1.8 513,754 - Rru_A0438 0.13 -0.7 513,785 + Rru_A0438 0.14 -0.3 513,786 - Rru_A0438 0.14 -1.7 513,786 - Rru_A0438 0.14 -0.3 513,786 - Rru_A0438 0.14 -2.2 513,786 - Rru_A0438 0.14 +1.1 513,881 + Rru_A0438 0.18 +0.0 513,881 + Rru_A0438 0.18 -1.3 513,882 - Rru_A0438 0.18 -2.1 513,882 - Rru_A0438 0.18 +4.8 513,882 - Rru_A0438 0.18 +1.2
Or see this region's nucleotide sequence