Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0436

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0435 and Rru_A0436 are separated by 290 nucleotidesRru_A0436 and Rru_A0437 are separated by 215 nucleotides Rru_A0435: Rru_A0435 - Acyl-CoA dehydrogenase (NCBI), at 509,313 to 511,082 _A0435 Rru_A0436: Rru_A0436 - hypothetical protein (NCBI), at 511,373 to 511,891 _A0436 Rru_A0437: Rru_A0437 - OmpA family protein (NCBI), at 512,107 to 513,129 _A0437 Position (kb) 511 512Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 510.481 kb on + strand, within Rru_A0435at 510.481 kb on + strand, within Rru_A0435at 510.482 kb on - strand, within Rru_A0435at 510.482 kb on - strand, within Rru_A0435at 510.482 kb on - strand, within Rru_A0435at 510.514 kb on + strand, within Rru_A0435at 510.514 kb on + strand, within Rru_A0435at 510.514 kb on + strand, within Rru_A0435at 510.515 kb on - strand, within Rru_A0435at 510.515 kb on - strand, within Rru_A0435at 510.515 kb on - strand, within Rru_A0435at 510.791 kb on - strand, within Rru_A0435at 510.841 kb on + strand, within Rru_A0435at 510.842 kb on - strand, within Rru_A0435at 510.842 kb on - strand, within Rru_A0435at 510.842 kb on - strand, within Rru_A0435at 510.842 kb on - strand, within Rru_A0435at 510.842 kb on - strand, within Rru_A0435at 511.091 kb on + strandat 511.092 kb on - strandat 511.092 kb on - strandat 511.092 kb on - strandat 511.189 kb on - strandat 511.189 kb on - strandat 511.889 kb on + strandat 512.108 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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510,481 + Rru_A0435 0.66 -0.1
510,481 + Rru_A0435 0.66 +0.6
510,482 - Rru_A0435 0.66 -3.5
510,482 - Rru_A0435 0.66 +2.3
510,482 - Rru_A0435 0.66 -1.7
510,514 + Rru_A0435 0.68 -0.4
510,514 + Rru_A0435 0.68 -0.3
510,514 + Rru_A0435 0.68 -0.3
510,515 - Rru_A0435 0.68 +0.0
510,515 - Rru_A0435 0.68 -2.5
510,515 - Rru_A0435 0.68 +2.9
510,791 - Rru_A0435 0.84 -1.2
510,841 + Rru_A0435 0.86 +1.2
510,842 - Rru_A0435 0.86 +1.0
510,842 - Rru_A0435 0.86 -1.8
510,842 - Rru_A0435 0.86 -4.5
510,842 - Rru_A0435 0.86 -0.3
510,842 - Rru_A0435 0.86 -2.6
511,091 + -1.8
511,092 - +0.5
511,092 - +1.1
511,092 - -2.7
511,189 - +0.5
511,189 - +0.0
511,889 + -0.8
512,108 + -1.2

Or see this region's nucleotide sequence