Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0433 and Rru_A0434 are separated by 40 nucleotides Rru_A0434 and Rru_A0435 are separated by 200 nucleotides
Rru_A0433: Rru_A0433 - PpiC-type peptidyl-prolyl cis-trans isomerase (NCBI), at 505,077 to 506,411
_A0433
Rru_A0434: Rru_A0434 - Organic solvent tolerance protein OstA-like (NCBI), at 506,452 to 509,112
_A0434
Rru_A0435: Rru_A0435 - Acyl-CoA dehydrogenase (NCBI), at 509,313 to 511,082
_A0435
Position (kb) 506
507
508
509
510 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 506.465 kb on + strand at 506.466 kb on - strand at 506.466 kb on - strand at 506.466 kb on - strand at 509.254 kb on + strand at 509.255 kb on - strand at 509.273 kb on - strand at 509.273 kb on - strand at 509.275 kb on - strand at 509.275 kb on - strand at 509.275 kb on - strand at 509.568 kb on - strand, within Rru_A0435 at 509.568 kb on - strand, within Rru_A0435 at 509.568 kb on - strand, within Rru_A0435 at 509.679 kb on + strand, within Rru_A0435 at 509.761 kb on + strand, within Rru_A0435 at 509.761 kb on + strand, within Rru_A0435 at 509.761 kb on + strand, within Rru_A0435 at 509.762 kb on - strand, within Rru_A0435 at 509.816 kb on + strand, within Rru_A0435 at 509.818 kb on + strand, within Rru_A0435 at 509.818 kb on + strand, within Rru_A0435 at 509.818 kb on + strand, within Rru_A0435 at 509.818 kb on + strand, within Rru_A0435 at 509.818 kb on + strand, within Rru_A0435 at 509.818 kb on + strand, within Rru_A0435 at 509.818 kb on + strand, within Rru_A0435 at 509.819 kb on - strand, within Rru_A0435 at 509.819 kb on - strand, within Rru_A0435 at 509.986 kb on + strand, within Rru_A0435 at 509.986 kb on + strand, within Rru_A0435 at 509.987 kb on - strand, within Rru_A0435 at 509.987 kb on - strand, within Rru_A0435
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 506,465 + -3.2 506,466 - -2.0 506,466 - +2.2 506,466 - +2.0 509,254 + -0.6 509,255 - -1.2 509,273 - -0.5 509,273 - +0.1 509,275 - -1.6 509,275 - +2.0 509,275 - +1.1 509,568 - Rru_A0435 0.14 -0.7 509,568 - Rru_A0435 0.14 -0.8 509,568 - Rru_A0435 0.14 -1.4 509,679 + Rru_A0435 0.21 +1.0 509,761 + Rru_A0435 0.25 -1.0 509,761 + Rru_A0435 0.25 -2.1 509,761 + Rru_A0435 0.25 +1.7 509,762 - Rru_A0435 0.25 -2.1 509,816 + Rru_A0435 0.28 +0.7 509,818 + Rru_A0435 0.29 -0.3 509,818 + Rru_A0435 0.29 -2.1 509,818 + Rru_A0435 0.29 +1.7 509,818 + Rru_A0435 0.29 -1.6 509,818 + Rru_A0435 0.29 -2.4 509,818 + Rru_A0435 0.29 -2.7 509,818 + Rru_A0435 0.29 +1.6 509,819 - Rru_A0435 0.29 -1.8 509,819 - Rru_A0435 0.29 -2.2 509,986 + Rru_A0435 0.38 -2.3 509,986 + Rru_A0435 0.38 -2.8 509,987 - Rru_A0435 0.38 +1.3 509,987 - Rru_A0435 0.38 +2.9
Or see this region's nucleotide sequence