Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0428

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0427 and Rru_A0428 are separated by 245 nucleotidesRru_A0428 and Rru_A0429 are separated by 12 nucleotidesRru_A0429 and Rru_A0430 are separated by 80 nucleotides Rru_A0427: Rru_A0427 - Short-chain dehydrogenase/reductase SDR (NCBI), at 499,592 to 500,362 _A0427 Rru_A0428: Rru_A0428 - hypothetical protein (NCBI), at 500,608 to 501,495 _A0428 Rru_A0429: Rru_A0429 - Guanylate kinase (NCBI), at 501,508 to 502,164 _A0429 Rru_A0430: Rru_A0430 - Ribonuclease BN (NCBI), at 502,245 to 503,186 _A0430 Position (kb) 500 501 502Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 499.908 kb on + strand, within Rru_A0427at 499.908 kb on + strand, within Rru_A0427at 499.908 kb on + strand, within Rru_A0427at 499.909 kb on - strand, within Rru_A0427at 499.909 kb on - strand, within Rru_A0427at 499.909 kb on - strand, within Rru_A0427at 499.909 kb on - strand, within Rru_A0427at 499.909 kb on - strand, within Rru_A0427at 500.292 kb on + strandat 500.393 kb on + strandat 500.393 kb on + strandat 500.393 kb on + strandat 500.393 kb on + strandat 500.394 kb on - strandat 500.394 kb on - strandat 500.394 kb on - strandat 500.394 kb on - strandat 500.394 kb on - strandat 500.394 kb on - strandat 500.394 kb on - strandat 500.394 kb on - strandat 500.394 kb on - strandat 500.394 kb on - strandat 500.395 kb on + strandat 500.395 kb on + strandat 500.395 kb on + strandat 500.396 kb on - strandat 500.497 kb on - strandat 500.497 kb on - strandat 500.516 kb on - strandat 500.527 kb on - strandat 500.527 kb on - strandat 502.162 kb on + strandat 502.163 kb on - strandat 502.276 kb on + strandat 502.276 kb on + strandat 502.277 kb on - strandat 502.277 kb on - strandat 502.277 kb on - strandat 502.449 kb on + strand, within Rru_A0430at 502.449 kb on + strand, within Rru_A0430at 502.450 kb on - strand, within Rru_A0430

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
499,908 + Rru_A0427 0.41 -2.8
499,908 + Rru_A0427 0.41 +0.1
499,908 + Rru_A0427 0.41 -0.2
499,909 - Rru_A0427 0.41 +0.7
499,909 - Rru_A0427 0.41 +0.8
499,909 - Rru_A0427 0.41 -1.3
499,909 - Rru_A0427 0.41 +0.6
499,909 - Rru_A0427 0.41 +0.2
500,292 + +0.2
500,393 + -0.8
500,393 + -2.4
500,393 + +1.4
500,393 + -0.5
500,394 - +2.0
500,394 - +1.0
500,394 - +1.7
500,394 - -1.6
500,394 - -1.3
500,394 - +1.2
500,394 - +0.4
500,394 - -0.8
500,394 - -0.8
500,394 - +0.4
500,395 + -0.3
500,395 + -0.3
500,395 + +0.6
500,396 - +1.4
500,497 - -0.1
500,497 - +1.1
500,516 - -2.3
500,527 - +0.0
500,527 - +3.6
502,162 + +1.7
502,163 - +1.3
502,276 + -0.3
502,276 + -0.9
502,277 - -1.3
502,277 - -1.0
502,277 - -0.2
502,449 + Rru_A0430 0.22 -1.0
502,449 + Rru_A0430 0.22 -1.7
502,450 - Rru_A0430 0.22 -0.3

Or see this region's nucleotide sequence