Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0420

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0419 and Rru_A0420 are separated by 18 nucleotidesRru_A0420 and Rru_A0421 are separated by 155 nucleotidesRru_A0421 and Rru_A0422 are separated by 95 nucleotides Rru_A0419: Rru_A0419 - Aminodeoxychorismate lyase (NCBI), at 495,193 to 496,179 _A0419 Rru_A0420: Rru_A0420 - hypothetical protein (NCBI), at 496,198 to 496,593 _A0420 Rru_A0421: Rru_A0421 - hypothetical protein (NCBI), at 496,749 to 497,075 _A0421 Rru_A0422: Rru_A0422 - hypothetical protein (NCBI), at 497,171 to 497,557 _A0422 Position (kb) 496 497Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 495.257 kb on - strandat 495.257 kb on - strandat 495.257 kb on - strandat 495.257 kb on - strandat 495.262 kb on + strandat 495.262 kb on + strandat 495.262 kb on + strandat 495.262 kb on + strandat 495.262 kb on + strandat 495.262 kb on + strandat 495.262 kb on + strandat 495.263 kb on - strandat 495.263 kb on - strandat 495.263 kb on - strandat 495.263 kb on - strandat 495.640 kb on + strand, within Rru_A0419at 495.640 kb on + strand, within Rru_A0419at 495.641 kb on - strand, within Rru_A0419at 495.641 kb on - strand, within Rru_A0419at 495.641 kb on - strand, within Rru_A0419at 495.641 kb on - strand, within Rru_A0419at 495.642 kb on + strand, within Rru_A0419at 495.642 kb on + strand, within Rru_A0419at 495.642 kb on + strand, within Rru_A0419at 495.642 kb on + strand, within Rru_A0419at 495.643 kb on - strand, within Rru_A0419at 495.643 kb on - strand, within Rru_A0419at 495.643 kb on - strand, within Rru_A0419at 495.646 kb on + strand, within Rru_A0419at 495.646 kb on + strand, within Rru_A0419at 495.647 kb on - strand, within Rru_A0419at 495.892 kb on + strand, within Rru_A0419at 495.892 kb on + strand, within Rru_A0419at 495.892 kb on + strand, within Rru_A0419at 495.892 kb on + strand, within Rru_A0419at 495.892 kb on + strand, within Rru_A0419at 495.892 kb on + strand, within Rru_A0419at 495.893 kb on - strand, within Rru_A0419at 495.893 kb on - strand, within Rru_A0419at 495.893 kb on - strand, within Rru_A0419at 495.893 kb on - strand, within Rru_A0419at 495.893 kb on - strand, within Rru_A0419at 495.893 kb on - strand, within Rru_A0419at 495.973 kb on + strand, within Rru_A0419at 495.973 kb on + strand, within Rru_A0419at 495.973 kb on + strand, within Rru_A0419at 495.973 kb on + strand, within Rru_A0419at 495.973 kb on + strand, within Rru_A0419at 495.973 kb on + strand, within Rru_A0419at 495.973 kb on + strand, within Rru_A0419at 495.973 kb on + strand, within Rru_A0419at 495.974 kb on - strand, within Rru_A0419at 495.974 kb on - strand, within Rru_A0419at 495.974 kb on - strand, within Rru_A0419at 495.974 kb on - strand, within Rru_A0419at 495.974 kb on - strand, within Rru_A0419at 496.066 kb on + strand, within Rru_A0419at 496.066 kb on + strand, within Rru_A0419at 496.066 kb on + strand, within Rru_A0419at 496.066 kb on + strand, within Rru_A0419at 496.067 kb on - strand, within Rru_A0419at 496.067 kb on - strand, within Rru_A0419at 496.067 kb on - strand, within Rru_A0419at 496.199 kb on + strandat 496.200 kb on - strandat 496.456 kb on - strand, within Rru_A0420at 496.657 kb on - strandat 496.750 kb on + strandat 496.979 kb on + strand, within Rru_A0421at 497.008 kb on + strand, within Rru_A0421at 497.009 kb on - strand, within Rru_A0421at 497.009 kb on - strand, within Rru_A0421at 497.112 kb on - strandat 497.361 kb on + strand, within Rru_A0422at 497.361 kb on + strand, within Rru_A0422at 497.362 kb on - strand, within Rru_A0422at 497.362 kb on - strand, within Rru_A0422

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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495,257 - +1.6
495,257 - +0.4
495,257 - +2.0
495,257 - -1.0
495,262 + -0.3
495,262 + -1.9
495,262 + -1.0
495,262 + -0.8
495,262 + -1.1
495,262 + -1.0
495,262 + -1.0
495,263 - -2.4
495,263 - -2.6
495,263 - -1.0
495,263 - +0.0
495,640 + Rru_A0419 0.45 +0.5
495,640 + Rru_A0419 0.45 -0.1
495,641 - Rru_A0419 0.45 -1.2
495,641 - Rru_A0419 0.45 +1.5
495,641 - Rru_A0419 0.45 -1.6
495,641 - Rru_A0419 0.45 +0.5
495,642 + Rru_A0419 0.45 -1.3
495,642 + Rru_A0419 0.45 -0.5
495,642 + Rru_A0419 0.45 +2.0
495,642 + Rru_A0419 0.45 -2.2
495,643 - Rru_A0419 0.46 -2.1
495,643 - Rru_A0419 0.46 +1.6
495,643 - Rru_A0419 0.46 -1.4
495,646 + Rru_A0419 0.46 +0.4
495,646 + Rru_A0419 0.46 +0.0
495,647 - Rru_A0419 0.46 -1.7
495,892 + Rru_A0419 0.71 -1.8
495,892 + Rru_A0419 0.71 -1.3
495,892 + Rru_A0419 0.71 -0.3
495,892 + Rru_A0419 0.71 +0.0
495,892 + Rru_A0419 0.71 +0.4
495,892 + Rru_A0419 0.71 +0.7
495,893 - Rru_A0419 0.71 +2.2
495,893 - Rru_A0419 0.71 -1.4
495,893 - Rru_A0419 0.71 -2.4
495,893 - Rru_A0419 0.71 +0.4
495,893 - Rru_A0419 0.71 +0.1
495,893 - Rru_A0419 0.71 +0.0
495,973 + Rru_A0419 0.79 -0.8
495,973 + Rru_A0419 0.79 -0.7
495,973 + Rru_A0419 0.79 -0.9
495,973 + Rru_A0419 0.79 -1.3
495,973 + Rru_A0419 0.79 -2.3
495,973 + Rru_A0419 0.79 -2.8
495,973 + Rru_A0419 0.79 -3.6
495,973 + Rru_A0419 0.79 -2.2
495,974 - Rru_A0419 0.79 +0.3
495,974 - Rru_A0419 0.79 -1.9
495,974 - Rru_A0419 0.79 -2.7
495,974 - Rru_A0419 0.79 +0.4
495,974 - Rru_A0419 0.79 -0.1
496,066 + Rru_A0419 0.88 +0.9
496,066 + Rru_A0419 0.88 -0.3
496,066 + Rru_A0419 0.88 -1.3
496,066 + Rru_A0419 0.88 +0.7
496,067 - Rru_A0419 0.89 -2.7
496,067 - Rru_A0419 0.89 -1.1
496,067 - Rru_A0419 0.89 -2.7
496,199 + -2.1
496,200 - -1.1
496,456 - Rru_A0420 0.65 -0.1
496,657 - -1.2
496,750 + +2.3
496,979 + Rru_A0421 0.70 +0.1
497,008 + Rru_A0421 0.79 -3.0
497,009 - Rru_A0421 0.80 -0.2
497,009 - Rru_A0421 0.80 -3.2
497,112 - -0.4
497,361 + Rru_A0422 0.49 -2.2
497,361 + Rru_A0422 0.49 +0.3
497,362 - Rru_A0422 0.49 +2.0
497,362 - Rru_A0422 0.49 -1.0

Or see this region's nucleotide sequence