Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0418

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0416 and Rru_A0417 are separated by 194 nucleotidesRru_A0417 and Rru_A0418 are separated by 158 nucleotidesRru_A0418 and Rru_A0419 are separated by 29 nucleotides Rru_A0416: Rru_A0416 - 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI), at 492,577 to 493,314 _A0416 Rru_A0417: Rru_A0417 - Acyl carrier protein (ACP) (NCBI), at 493,509 to 493,742 _A0417 Rru_A0418: Rru_A0418 - Beta-ketoacyl synthase (NCBI), at 493,901 to 495,163 _A0418 Rru_A0419: Rru_A0419 - Aminodeoxychorismate lyase (NCBI), at 495,193 to 496,179 _A0419 Position (kb) 493 494 495 496Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 493.405 kb on + strandat 493.405 kb on + strandat 493.405 kb on + strandat 493.405 kb on + strandat 493.410 kb on + strandat 493.410 kb on + strandat 493.410 kb on + strandat 493.426 kb on + strandat 495.187 kb on - strandat 495.257 kb on - strandat 495.257 kb on - strandat 495.257 kb on - strandat 495.257 kb on - strandat 495.262 kb on + strandat 495.262 kb on + strandat 495.262 kb on + strandat 495.262 kb on + strandat 495.262 kb on + strandat 495.262 kb on + strandat 495.262 kb on + strandat 495.263 kb on - strandat 495.263 kb on - strandat 495.263 kb on - strandat 495.263 kb on - strandat 495.640 kb on + strand, within Rru_A0419at 495.640 kb on + strand, within Rru_A0419at 495.641 kb on - strand, within Rru_A0419at 495.641 kb on - strand, within Rru_A0419at 495.641 kb on - strand, within Rru_A0419at 495.641 kb on - strand, within Rru_A0419at 495.642 kb on + strand, within Rru_A0419at 495.642 kb on + strand, within Rru_A0419at 495.642 kb on + strand, within Rru_A0419at 495.642 kb on + strand, within Rru_A0419at 495.643 kb on - strand, within Rru_A0419at 495.643 kb on - strand, within Rru_A0419at 495.643 kb on - strand, within Rru_A0419at 495.646 kb on + strand, within Rru_A0419at 495.646 kb on + strand, within Rru_A0419at 495.647 kb on - strand, within Rru_A0419at 495.892 kb on + strand, within Rru_A0419at 495.892 kb on + strand, within Rru_A0419at 495.892 kb on + strand, within Rru_A0419at 495.892 kb on + strand, within Rru_A0419at 495.892 kb on + strand, within Rru_A0419at 495.892 kb on + strand, within Rru_A0419at 495.893 kb on - strand, within Rru_A0419at 495.893 kb on - strand, within Rru_A0419at 495.893 kb on - strand, within Rru_A0419at 495.893 kb on - strand, within Rru_A0419at 495.893 kb on - strand, within Rru_A0419at 495.893 kb on - strand, within Rru_A0419at 495.973 kb on + strand, within Rru_A0419at 495.973 kb on + strand, within Rru_A0419at 495.973 kb on + strand, within Rru_A0419at 495.973 kb on + strand, within Rru_A0419at 495.973 kb on + strand, within Rru_A0419at 495.973 kb on + strand, within Rru_A0419at 495.973 kb on + strand, within Rru_A0419at 495.973 kb on + strand, within Rru_A0419at 495.974 kb on - strand, within Rru_A0419at 495.974 kb on - strand, within Rru_A0419at 495.974 kb on - strand, within Rru_A0419at 495.974 kb on - strand, within Rru_A0419at 495.974 kb on - strand, within Rru_A0419at 496.066 kb on + strand, within Rru_A0419at 496.066 kb on + strand, within Rru_A0419at 496.066 kb on + strand, within Rru_A0419at 496.066 kb on + strand, within Rru_A0419at 496.067 kb on - strand, within Rru_A0419at 496.067 kb on - strand, within Rru_A0419at 496.067 kb on - strand, within Rru_A0419

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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493,405 + +0.9
493,405 + +0.4
493,405 + -1.1
493,405 + +1.4
493,410 + +4.1
493,410 + -3.0
493,410 + -0.1
493,426 + -1.7
495,187 - -1.4
495,257 - +1.6
495,257 - +0.4
495,257 - +2.0
495,257 - -1.0
495,262 + -0.3
495,262 + -1.9
495,262 + -1.0
495,262 + -0.8
495,262 + -1.1
495,262 + -1.0
495,262 + -1.0
495,263 - -2.4
495,263 - -2.6
495,263 - -1.0
495,263 - +0.0
495,640 + Rru_A0419 0.45 +0.5
495,640 + Rru_A0419 0.45 -0.1
495,641 - Rru_A0419 0.45 -1.2
495,641 - Rru_A0419 0.45 +1.5
495,641 - Rru_A0419 0.45 -1.6
495,641 - Rru_A0419 0.45 +0.5
495,642 + Rru_A0419 0.45 -1.3
495,642 + Rru_A0419 0.45 -0.5
495,642 + Rru_A0419 0.45 +2.0
495,642 + Rru_A0419 0.45 -2.2
495,643 - Rru_A0419 0.46 -2.1
495,643 - Rru_A0419 0.46 +1.6
495,643 - Rru_A0419 0.46 -1.4
495,646 + Rru_A0419 0.46 +0.4
495,646 + Rru_A0419 0.46 +0.0
495,647 - Rru_A0419 0.46 -1.7
495,892 + Rru_A0419 0.71 -1.8
495,892 + Rru_A0419 0.71 -1.3
495,892 + Rru_A0419 0.71 -0.3
495,892 + Rru_A0419 0.71 +0.0
495,892 + Rru_A0419 0.71 +0.4
495,892 + Rru_A0419 0.71 +0.7
495,893 - Rru_A0419 0.71 +2.2
495,893 - Rru_A0419 0.71 -1.4
495,893 - Rru_A0419 0.71 -2.4
495,893 - Rru_A0419 0.71 +0.4
495,893 - Rru_A0419 0.71 +0.1
495,893 - Rru_A0419 0.71 +0.0
495,973 + Rru_A0419 0.79 -0.8
495,973 + Rru_A0419 0.79 -0.7
495,973 + Rru_A0419 0.79 -0.9
495,973 + Rru_A0419 0.79 -1.3
495,973 + Rru_A0419 0.79 -2.3
495,973 + Rru_A0419 0.79 -2.8
495,973 + Rru_A0419 0.79 -3.6
495,973 + Rru_A0419 0.79 -2.2
495,974 - Rru_A0419 0.79 +0.3
495,974 - Rru_A0419 0.79 -1.9
495,974 - Rru_A0419 0.79 -2.7
495,974 - Rru_A0419 0.79 +0.4
495,974 - Rru_A0419 0.79 -0.1
496,066 + Rru_A0419 0.88 +0.9
496,066 + Rru_A0419 0.88 -0.3
496,066 + Rru_A0419 0.88 -1.3
496,066 + Rru_A0419 0.88 +0.7
496,067 - Rru_A0419 0.89 -2.7
496,067 - Rru_A0419 0.89 -1.1
496,067 - Rru_A0419 0.89 -2.7

Or see this region's nucleotide sequence