Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0413

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0412 and Rru_A0413 are separated by 74 nucleotidesRru_A0413 and Rru_A0414 overlap by 4 nucleotidesRru_A0414 and Rru_A0415 are separated by 294 nucleotides Rru_A0412: Rru_A0412 - hypothetical protein (NCBI), at 489,520 to 490,446 _A0412 Rru_A0413: Rru_A0413 - Ribosomal protein S18 (NCBI), at 490,521 to 490,757 _A0413 Rru_A0414: Rru_A0414 - Ribosomal protein S6 (NCBI), at 490,754 to 491,236 _A0414 Rru_A0415: Rru_A0415 - Malonyl CoA-acyl carrier protein transacylase (NCBI), at 491,531 to 492,469 _A0415 Position (kb) 490 491Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8at 489.739 kb on - strand, within Rru_A0412at 489.739 kb on - strand, within Rru_A0412at 489.739 kb on - strand, within Rru_A0412at 489.739 kb on - strand, within Rru_A0412at 489.939 kb on - strand, within Rru_A0412at 489.939 kb on - strand, within Rru_A0412at 490.224 kb on - strand, within Rru_A0412at 490.377 kb on - strandat 491.353 kb on - strandat 491.353 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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489,739 - Rru_A0412 0.24 +2.8
489,739 - Rru_A0412 0.24 +8.4
489,739 - Rru_A0412 0.24 +4.2
489,739 - Rru_A0412 0.24 +5.7
489,939 - Rru_A0412 0.45 -0.6
489,939 - Rru_A0412 0.45 +3.8
490,224 - Rru_A0412 0.76 +4.7
490,377 - +5.1
491,353 - +2.1
491,353 - +1.3

Or see this region's nucleotide sequence