Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0410

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0409 and Rru_A0410 are separated by 92 nucleotidesRru_A0410 and Rru_A0411 are separated by 172 nucleotidesRru_A0411 and Rru_A0412 are separated by 39 nucleotides Rru_A0409: Rru_A0409 - Alanine racemase region (NCBI), at 485,980 to 487,104 _A0409 Rru_A0410: Rru_A0410 - DnaB helicase (NCBI), at 487,197 to 488,720 _A0410 Rru_A0411: Rru_A0411 - Ribosomal protein L9 (NCBI), at 488,893 to 489,480 _A0411 Rru_A0412: Rru_A0412 - hypothetical protein (NCBI), at 489,520 to 490,446 _A0412 Position (kb) 487 488 489Strain fitness (log2 ratio) -1 0 1 2at 486.975 kb on - strand, within Rru_A0409at 487.072 kb on - strandat 487.122 kb on + strandat 487.169 kb on + strandat 487.169 kb on + strandat 487.172 kb on - strandat 487.198 kb on + strandat 487.199 kb on - strandat 488.731 kb on + strandat 488.732 kb on - strandat 488.907 kb on - strandat 488.907 kb on - strandat 488.907 kb on - strandat 489.210 kb on - strand, within Rru_A0411at 489.210 kb on - strand, within Rru_A0411

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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486,975 - Rru_A0409 0.88 -1.3
487,072 - +0.4
487,122 + +0.5
487,169 + -0.4
487,169 + -0.2
487,172 - -0.5
487,198 + +1.7
487,199 - +0.3
488,731 + -1.1
488,732 - +1.0
488,907 - +1.9
488,907 - -0.6
488,907 - -1.1
489,210 - Rru_A0411 0.54 -0.3
489,210 - Rru_A0411 0.54 -0.6

Or see this region's nucleotide sequence