Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0409

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0407 and Rru_A0408 overlap by 4 nucleotidesRru_A0408 and Rru_A0409 overlap by 4 nucleotidesRru_A0409 and Rru_A0410 are separated by 92 nucleotides Rru_A0407: Rru_A0407 - ABC transporter component (NCBI), at 484,440 to 485,213 _A0407 Rru_A0408: Rru_A0408 - Protein of unknown function DUF140 (NCBI), at 485,210 to 485,983 _A0408 Rru_A0409: Rru_A0409 - Alanine racemase region (NCBI), at 485,980 to 487,104 _A0409 Rru_A0410: Rru_A0410 - DnaB helicase (NCBI), at 487,197 to 488,720 _A0410 Position (kb) 485 486 487 488Strain fitness (log2 ratio) -1 0 1at 486.064 kb on - strandat 486.975 kb on - strand, within Rru_A0409at 487.072 kb on - strandat 487.122 kb on + strandat 487.169 kb on + strandat 487.169 kb on + strandat 487.172 kb on - strandat 487.198 kb on + strandat 487.199 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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486,064 - +0.3
486,975 - Rru_A0409 0.88 -1.3
487,072 - +0.4
487,122 + +0.5
487,169 + -0.4
487,169 + -0.2
487,172 - -0.5
487,198 + +1.7
487,199 - +0.3

Or see this region's nucleotide sequence