Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0408

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0406 and Rru_A0407 are separated by 49 nucleotidesRru_A0407 and Rru_A0408 overlap by 4 nucleotidesRru_A0408 and Rru_A0409 overlap by 4 nucleotides Rru_A0406: Rru_A0406 - DNA repair protein RadA (NCBI), at 482,981 to 484,390 _A0406 Rru_A0407: Rru_A0407 - ABC transporter component (NCBI), at 484,440 to 485,213 _A0407 Rru_A0408: Rru_A0408 - Protein of unknown function DUF140 (NCBI), at 485,210 to 485,983 _A0408 Rru_A0409: Rru_A0409 - Alanine racemase region (NCBI), at 485,980 to 487,104 _A0409 Position (kb) 485 486Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 484.341 kb on + strandat 484.341 kb on + strandat 484.485 kb on + strandat 486.064 kb on - strandat 486.975 kb on - strand, within Rru_A0409

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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484,341 + +1.8
484,341 + +2.4
484,485 + -3.0
486,064 - +0.3
486,975 - Rru_A0409 0.88 -1.3

Or see this region's nucleotide sequence