Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0404 and Rru_A0405 are separated by 45 nucleotides Rru_A0405 and Rru_A0406 overlap by 1 nucleotides
Rru_A0404: Rru_A0404 - Amidophosphoribosyl transferase (NCBI), at 480,759 to 482,225
_A0404
Rru_A0405: Rru_A0405 - Colicin V production protein (NCBI), at 482,271 to 482,981
_A0405
Rru_A0406: Rru_A0406 - DNA repair protein RadA (NCBI), at 482,981 to 484,390
_A0406
Position (kb) 482
483 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 481.292 kb on - strand, within Rru_A0404 at 481.396 kb on + strand, within Rru_A0404 at 481.397 kb on - strand, within Rru_A0404 at 481.438 kb on + strand, within Rru_A0404 at 481.438 kb on + strand, within Rru_A0404 at 481.438 kb on + strand, within Rru_A0404 at 481.439 kb on - strand, within Rru_A0404 at 481.439 kb on - strand, within Rru_A0404 at 481.439 kb on - strand, within Rru_A0404 at 481.439 kb on - strand, within Rru_A0404 at 481.439 kb on - strand, within Rru_A0404 at 481.444 kb on + strand, within Rru_A0404 at 481.444 kb on + strand, within Rru_A0404 at 481.444 kb on + strand, within Rru_A0404 at 481.444 kb on + strand, within Rru_A0404 at 481.444 kb on + strand, within Rru_A0404 at 481.445 kb on - strand, within Rru_A0404 at 481.445 kb on - strand, within Rru_A0404 at 481.445 kb on - strand, within Rru_A0404 at 481.445 kb on - strand, within Rru_A0404 at 481.445 kb on - strand, within Rru_A0404 at 481.445 kb on - strand, within Rru_A0404 at 481.549 kb on + strand, within Rru_A0404 at 481.550 kb on - strand, within Rru_A0404 at 481.565 kb on + strand, within Rru_A0404 at 481.566 kb on - strand, within Rru_A0404 at 481.595 kb on + strand, within Rru_A0404 at 481.595 kb on + strand, within Rru_A0404 at 481.596 kb on - strand, within Rru_A0404 at 481.597 kb on + strand, within Rru_A0404 at 481.597 kb on + strand, within Rru_A0404 at 481.598 kb on - strand, within Rru_A0404 at 481.598 kb on - strand, within Rru_A0404 at 481.690 kb on + strand, within Rru_A0404 at 481.691 kb on - strand, within Rru_A0404 at 481.691 kb on - strand, within Rru_A0404 at 481.859 kb on + strand, within Rru_A0404 at 481.860 kb on - strand, within Rru_A0404 at 481.910 kb on + strand, within Rru_A0404 at 481.911 kb on - strand, within Rru_A0404 at 482.118 kb on - strand at 482.238 kb on + strand at 482.238 kb on + strand at 482.238 kb on + strand at 482.238 kb on + strand at 482.238 kb on + strand at 482.238 kb on + strand at 482.239 kb on - strand at 482.273 kb on - strand at 483.330 kb on + strand, within Rru_A0406 at 483.330 kb on + strand, within Rru_A0406 at 483.682 kb on - strand, within Rru_A0406 at 483.700 kb on + strand, within Rru_A0406 at 483.700 kb on + strand, within Rru_A0406 at 483.700 kb on + strand, within Rru_A0406 at 483.701 kb on - strand, within Rru_A0406 at 483.701 kb on - strand, within Rru_A0406 at 483.701 kb on - strand, within Rru_A0406 at 483.858 kb on + strand, within Rru_A0406 at 483.858 kb on + strand, within Rru_A0406 at 483.859 kb on - strand, within Rru_A0406
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 481,292 - Rru_A0404 0.36 -2.8 481,396 + Rru_A0404 0.43 -3.8 481,397 - Rru_A0404 0.43 -2.7 481,438 + Rru_A0404 0.46 -4.3 481,438 + Rru_A0404 0.46 -5.3 481,438 + Rru_A0404 0.46 -0.3 481,439 - Rru_A0404 0.46 -3.6 481,439 - Rru_A0404 0.46 -3.4 481,439 - Rru_A0404 0.46 -1.4 481,439 - Rru_A0404 0.46 -5.2 481,439 - Rru_A0404 0.46 -2.9 481,444 + Rru_A0404 0.47 -1.1 481,444 + Rru_A0404 0.47 -2.1 481,444 + Rru_A0404 0.47 -2.1 481,444 + Rru_A0404 0.47 -3.4 481,444 + Rru_A0404 0.47 -1.6 481,445 - Rru_A0404 0.47 -4.3 481,445 - Rru_A0404 0.47 +1.0 481,445 - Rru_A0404 0.47 -3.3 481,445 - Rru_A0404 0.47 -5.0 481,445 - Rru_A0404 0.47 +2.0 481,445 - Rru_A0404 0.47 -2.8 481,549 + Rru_A0404 0.54 -0.8 481,550 - Rru_A0404 0.54 -4.8 481,565 + Rru_A0404 0.55 -1.0 481,566 - Rru_A0404 0.55 -2.4 481,595 + Rru_A0404 0.57 -1.6 481,595 + Rru_A0404 0.57 -2.5 481,596 - Rru_A0404 0.57 -2.4 481,597 + Rru_A0404 0.57 -0.8 481,597 + Rru_A0404 0.57 -3.4 481,598 - Rru_A0404 0.57 -1.6 481,598 - Rru_A0404 0.57 -3.6 481,690 + Rru_A0404 0.63 -2.9 481,691 - Rru_A0404 0.64 -3.3 481,691 - Rru_A0404 0.64 -4.0 481,859 + Rru_A0404 0.75 -3.4 481,860 - Rru_A0404 0.75 -2.5 481,910 + Rru_A0404 0.78 -1.6 481,911 - Rru_A0404 0.79 -1.2 482,118 - -3.2 482,238 + -1.1 482,238 + -3.9 482,238 + -0.8 482,238 + -1.9 482,238 + +0.4 482,238 + -2.6 482,239 - +0.0 482,273 - -0.7 483,330 + Rru_A0406 0.25 -1.0 483,330 + Rru_A0406 0.25 -1.0 483,682 - Rru_A0406 0.50 +0.4 483,700 + Rru_A0406 0.51 +2.4 483,700 + Rru_A0406 0.51 +2.3 483,700 + Rru_A0406 0.51 +2.3 483,701 - Rru_A0406 0.51 +0.4 483,701 - Rru_A0406 0.51 -0.1 483,701 - Rru_A0406 0.51 +2.0 483,858 + Rru_A0406 0.62 +1.7 483,858 + Rru_A0406 0.62 +2.9 483,859 - Rru_A0406 0.62 -1.9
Or see this region's nucleotide sequence