Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0403

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0401 and Rru_A0402 are separated by 4 nucleotidesRru_A0402 and Rru_A0403 are separated by 33 nucleotidesRru_A0403 and Rru_A0404 are separated by 154 nucleotides Rru_A0401: Rru_A0401 - hypothetical protein (NCBI), at 478,564 to 479,253 _A0401 Rru_A0402: Rru_A0402 - hypothetical protein (NCBI), at 479,258 to 479,857 _A0402 Rru_A0403: Rru_A0403 - Short-chain dehydrogenase/reductase SDR (NCBI), at 479,891 to 480,604 _A0403 Rru_A0404: Rru_A0404 - Amidophosphoribosyl transferase (NCBI), at 480,759 to 482,225 _A0404 Position (kb) 479 480 481Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 478.897 kb on - strand, within Rru_A0401at 478.897 kb on - strand, within Rru_A0401at 479.351 kb on + strand, within Rru_A0402at 479.432 kb on + strand, within Rru_A0402at 479.432 kb on + strand, within Rru_A0402at 479.432 kb on + strand, within Rru_A0402at 479.432 kb on + strand, within Rru_A0402at 479.432 kb on + strand, within Rru_A0402at 479.433 kb on - strand, within Rru_A0402at 479.433 kb on - strand, within Rru_A0402at 479.433 kb on - strand, within Rru_A0402at 479.433 kb on - strand, within Rru_A0402at 479.433 kb on - strand, within Rru_A0402at 479.435 kb on + strand, within Rru_A0402at 479.436 kb on - strand, within Rru_A0402at 479.436 kb on - strand, within Rru_A0402at 479.575 kb on + strand, within Rru_A0402at 479.575 kb on + strand, within Rru_A0402at 479.576 kb on - strand, within Rru_A0402at 479.679 kb on + strand, within Rru_A0402at 479.681 kb on + strand, within Rru_A0402at 479.682 kb on - strand, within Rru_A0402at 479.744 kb on - strand, within Rru_A0402at 479.745 kb on + strand, within Rru_A0402at 479.745 kb on + strand, within Rru_A0402at 479.745 kb on + strand, within Rru_A0402at 479.745 kb on + strand, within Rru_A0402at 479.746 kb on - strand, within Rru_A0402at 479.753 kb on + strand, within Rru_A0402at 479.753 kb on + strand, within Rru_A0402at 479.753 kb on + strand, within Rru_A0402at 479.753 kb on + strand, within Rru_A0402at 479.753 kb on + strand, within Rru_A0402at 479.754 kb on - strand, within Rru_A0402at 479.754 kb on - strand, within Rru_A0402at 479.892 kb on + strandat 479.893 kb on - strandat 480.133 kb on - strand, within Rru_A0403at 480.144 kb on + strand, within Rru_A0403at 480.241 kb on - strand, within Rru_A0403at 480.730 kb on + strandat 480.731 kb on - strandat 480.761 kb on - strandat 480.967 kb on + strand, within Rru_A0404at 480.967 kb on + strand, within Rru_A0404at 480.967 kb on + strand, within Rru_A0404at 480.968 kb on - strand, within Rru_A0404at 480.968 kb on - strand, within Rru_A0404at 480.968 kb on - strand, within Rru_A0404at 481.012 kb on + strand, within Rru_A0404at 481.012 kb on + strand, within Rru_A0404at 481.013 kb on - strand, within Rru_A0404at 481.013 kb on - strand, within Rru_A0404at 481.013 kb on - strand, within Rru_A0404at 481.013 kb on - strand, within Rru_A0404at 481.013 kb on - strand, within Rru_A0404at 481.013 kb on - strand, within Rru_A0404at 481.024 kb on + strand, within Rru_A0404at 481.025 kb on - strand, within Rru_A0404at 481.052 kb on + strand, within Rru_A0404at 481.052 kb on + strand, within Rru_A0404at 481.052 kb on + strand, within Rru_A0404at 481.052 kb on + strand, within Rru_A0404at 481.052 kb on + strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.053 kb on - strand, within Rru_A0404at 481.240 kb on + strand, within Rru_A0404at 481.240 kb on + strand, within Rru_A0404at 481.240 kb on + strand, within Rru_A0404at 481.240 kb on + strand, within Rru_A0404at 481.240 kb on + strand, within Rru_A0404at 481.241 kb on - strand, within Rru_A0404at 481.241 kb on - strand, within Rru_A0404at 481.241 kb on - strand, within Rru_A0404at 481.241 kb on - strand, within Rru_A0404at 481.241 kb on - strand, within Rru_A0404at 481.261 kb on + strand, within Rru_A0404at 481.292 kb on - strand, within Rru_A0404at 481.396 kb on + strand, within Rru_A0404at 481.397 kb on - strand, within Rru_A0404at 481.438 kb on + strand, within Rru_A0404at 481.438 kb on + strand, within Rru_A0404at 481.438 kb on + strand, within Rru_A0404at 481.439 kb on - strand, within Rru_A0404at 481.439 kb on - strand, within Rru_A0404at 481.439 kb on - strand, within Rru_A0404at 481.439 kb on - strand, within Rru_A0404at 481.439 kb on - strand, within Rru_A0404at 481.444 kb on + strand, within Rru_A0404at 481.444 kb on + strand, within Rru_A0404at 481.444 kb on + strand, within Rru_A0404at 481.444 kb on + strand, within Rru_A0404at 481.444 kb on + strand, within Rru_A0404at 481.445 kb on - strand, within Rru_A0404at 481.445 kb on - strand, within Rru_A0404at 481.445 kb on - strand, within Rru_A0404at 481.445 kb on - strand, within Rru_A0404at 481.445 kb on - strand, within Rru_A0404at 481.445 kb on - strand, within Rru_A0404at 481.549 kb on + strand, within Rru_A0404at 481.550 kb on - strand, within Rru_A0404at 481.565 kb on + strand, within Rru_A0404at 481.566 kb on - strand, within Rru_A0404at 481.595 kb on + strand, within Rru_A0404at 481.595 kb on + strand, within Rru_A0404at 481.596 kb on - strand, within Rru_A0404at 481.597 kb on + strand, within Rru_A0404at 481.597 kb on + strand, within Rru_A0404at 481.598 kb on - strand, within Rru_A0404at 481.598 kb on - strand, within Rru_A0404

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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478,897 - Rru_A0401 0.48 -1.0
478,897 - Rru_A0401 0.48 -2.0
479,351 + Rru_A0402 0.15 -0.6
479,432 + Rru_A0402 0.29 +0.2
479,432 + Rru_A0402 0.29 -1.6
479,432 + Rru_A0402 0.29 -1.8
479,432 + Rru_A0402 0.29 -0.8
479,432 + Rru_A0402 0.29 -0.6
479,433 - Rru_A0402 0.29 +0.4
479,433 - Rru_A0402 0.29 +0.1
479,433 - Rru_A0402 0.29 -3.1
479,433 - Rru_A0402 0.29 -0.6
479,433 - Rru_A0402 0.29 +0.9
479,435 + Rru_A0402 0.29 -2.6
479,436 - Rru_A0402 0.30 -1.7
479,436 - Rru_A0402 0.30 +3.8
479,575 + Rru_A0402 0.53 +2.0
479,575 + Rru_A0402 0.53 -1.6
479,576 - Rru_A0402 0.53 -2.7
479,679 + Rru_A0402 0.70 -0.2
479,681 + Rru_A0402 0.70 +1.0
479,682 - Rru_A0402 0.71 -1.0
479,744 - Rru_A0402 0.81 +3.3
479,745 + Rru_A0402 0.81 -0.4
479,745 + Rru_A0402 0.81 +2.2
479,745 + Rru_A0402 0.81 -2.8
479,745 + Rru_A0402 0.81 -0.8
479,746 - Rru_A0402 0.81 +1.8
479,753 + Rru_A0402 0.82 -1.4
479,753 + Rru_A0402 0.82 +4.3
479,753 + Rru_A0402 0.82 +2.0
479,753 + Rru_A0402 0.82 -1.4
479,753 + Rru_A0402 0.82 -2.5
479,754 - Rru_A0402 0.83 -2.6
479,754 - Rru_A0402 0.83 +1.0
479,892 + -2.9
479,893 - +1.4
480,133 - Rru_A0403 0.34 -0.6
480,144 + Rru_A0403 0.35 +1.0
480,241 - Rru_A0403 0.49 -2.1
480,730 + -3.4
480,731 - -0.1
480,761 - -0.7
480,967 + Rru_A0404 0.14 -4.2
480,967 + Rru_A0404 0.14 -3.1
480,967 + Rru_A0404 0.14 -2.1
480,968 - Rru_A0404 0.14 -1.9
480,968 - Rru_A0404 0.14 -3.3
480,968 - Rru_A0404 0.14 -2.4
481,012 + Rru_A0404 0.17 -2.6
481,012 + Rru_A0404 0.17 -3.2
481,013 - Rru_A0404 0.17 -3.5
481,013 - Rru_A0404 0.17 +1.0
481,013 - Rru_A0404 0.17 -3.0
481,013 - Rru_A0404 0.17 -1.4
481,013 - Rru_A0404 0.17 -2.7
481,013 - Rru_A0404 0.17 -4.1
481,024 + Rru_A0404 0.18 -1.3
481,025 - Rru_A0404 0.18 -1.4
481,052 + Rru_A0404 0.20 -1.3
481,052 + Rru_A0404 0.20 -3.7
481,052 + Rru_A0404 0.20 -4.4
481,052 + Rru_A0404 0.20 -2.2
481,052 + Rru_A0404 0.20 -0.6
481,053 - Rru_A0404 0.20 -1.7
481,053 - Rru_A0404 0.20 -2.0
481,053 - Rru_A0404 0.20 -2.1
481,053 - Rru_A0404 0.20 -1.0
481,053 - Rru_A0404 0.20 -2.0
481,053 - Rru_A0404 0.20 -4.9
481,053 - Rru_A0404 0.20 -3.4
481,053 - Rru_A0404 0.20 -2.5
481,053 - Rru_A0404 0.20 -4.4
481,053 - Rru_A0404 0.20 -4.8
481,053 - Rru_A0404 0.20 +0.0
481,053 - Rru_A0404 0.20 -1.0
481,240 + Rru_A0404 0.33 -0.6
481,240 + Rru_A0404 0.33 -3.2
481,240 + Rru_A0404 0.33 -4.2
481,240 + Rru_A0404 0.33 -3.4
481,240 + Rru_A0404 0.33 -1.1
481,241 - Rru_A0404 0.33 -2.8
481,241 - Rru_A0404 0.33 -4.9
481,241 - Rru_A0404 0.33 -3.9
481,241 - Rru_A0404 0.33 -1.8
481,241 - Rru_A0404 0.33 -5.0
481,261 + Rru_A0404 0.34 -1.7
481,292 - Rru_A0404 0.36 -2.8
481,396 + Rru_A0404 0.43 -3.8
481,397 - Rru_A0404 0.43 -2.7
481,438 + Rru_A0404 0.46 -4.3
481,438 + Rru_A0404 0.46 -5.3
481,438 + Rru_A0404 0.46 -0.3
481,439 - Rru_A0404 0.46 -3.6
481,439 - Rru_A0404 0.46 -3.4
481,439 - Rru_A0404 0.46 -1.4
481,439 - Rru_A0404 0.46 -5.2
481,439 - Rru_A0404 0.46 -2.9
481,444 + Rru_A0404 0.47 -1.1
481,444 + Rru_A0404 0.47 -2.1
481,444 + Rru_A0404 0.47 -2.1
481,444 + Rru_A0404 0.47 -3.4
481,444 + Rru_A0404 0.47 -1.6
481,445 - Rru_A0404 0.47 -4.3
481,445 - Rru_A0404 0.47 +1.0
481,445 - Rru_A0404 0.47 -3.3
481,445 - Rru_A0404 0.47 -5.0
481,445 - Rru_A0404 0.47 +2.0
481,445 - Rru_A0404 0.47 -2.8
481,549 + Rru_A0404 0.54 -0.8
481,550 - Rru_A0404 0.54 -4.8
481,565 + Rru_A0404 0.55 -1.0
481,566 - Rru_A0404 0.55 -2.4
481,595 + Rru_A0404 0.57 -1.6
481,595 + Rru_A0404 0.57 -2.5
481,596 - Rru_A0404 0.57 -2.4
481,597 + Rru_A0404 0.57 -0.8
481,597 + Rru_A0404 0.57 -3.4
481,598 - Rru_A0404 0.57 -1.6
481,598 - Rru_A0404 0.57 -3.6

Or see this region's nucleotide sequence