Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0398 and Rru_A0399 overlap by 6 nucleotides Rru_A0399 and Rru_A0400 are separated by 148 nucleotides Rru_A0400 and Rru_A0401 are separated by 126 nucleotides Rru_A0401 and Rru_A0402 are separated by 4 nucleotides
Rru_A0398: Rru_A0398 - Thiol-disulfide isomerase and thioredoxins-like (NCBI), at 475,443 to 476,114
_A0398
Rru_A0399: Rru_A0399 - Phosphoesterase, PA-phosphatase related (NCBI), at 476,109 to 476,846
_A0399
Rru_A0400: Rru_A0400 - hypothetical protein (NCBI), at 476,995 to 478,437
_A0400
Rru_A0401: Rru_A0401 - hypothetical protein (NCBI), at 478,564 to 479,253
_A0401
Rru_A0402: Rru_A0402 - hypothetical protein (NCBI), at 479,258 to 479,857
_A0402
Position (kb) 476
477
478
479 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 476.033 kb on + strand, within Rru_A0398 at 476.034 kb on - strand, within Rru_A0398 at 476.034 kb on - strand, within Rru_A0398 at 476.111 kb on - strand at 476.111 kb on - strand at 476.112 kb on + strand at 476.112 kb on + strand at 476.113 kb on - strand at 476.113 kb on - strand at 476.194 kb on + strand, within Rru_A0399 at 476.195 kb on - strand, within Rru_A0399 at 476.221 kb on + strand, within Rru_A0399 at 476.256 kb on + strand, within Rru_A0399 at 476.256 kb on + strand, within Rru_A0399 at 476.560 kb on - strand, within Rru_A0399 at 476.778 kb on - strand at 476.836 kb on - strand at 476.961 kb on + strand at 476.961 kb on + strand at 476.961 kb on + strand at 476.962 kb on - strand at 476.975 kb on + strand at 476.975 kb on + strand at 476.975 kb on + strand at 476.975 kb on + strand at 476.976 kb on - strand at 477.068 kb on + strand at 477.068 kb on + strand at 477.068 kb on + strand at 477.069 kb on - strand at 477.069 kb on - strand at 477.069 kb on - strand at 477.069 kb on - strand at 477.337 kb on + strand, within Rru_A0400 at 477.338 kb on - strand, within Rru_A0400 at 477.338 kb on - strand, within Rru_A0400 at 477.338 kb on - strand, within Rru_A0400 at 477.457 kb on + strand, within Rru_A0400 at 477.457 kb on + strand, within Rru_A0400 at 477.457 kb on + strand, within Rru_A0400 at 477.458 kb on - strand, within Rru_A0400 at 477.481 kb on + strand, within Rru_A0400 at 477.481 kb on + strand, within Rru_A0400 at 477.482 kb on - strand, within Rru_A0400 at 477.482 kb on - strand, within Rru_A0400 at 477.482 kb on - strand, within Rru_A0400 at 477.558 kb on + strand, within Rru_A0400 at 477.559 kb on - strand, within Rru_A0400 at 478.000 kb on + strand, within Rru_A0400 at 478.174 kb on + strand, within Rru_A0400 at 478.175 kb on - strand, within Rru_A0400 at 478.375 kb on + strand at 478.375 kb on + strand at 478.375 kb on + strand at 478.375 kb on + strand at 478.375 kb on + strand at 478.375 kb on + strand at 478.375 kb on + strand at 478.376 kb on - strand at 478.376 kb on - strand at 478.376 kb on - strand at 478.376 kb on - strand at 478.376 kb on - strand at 478.684 kb on - strand, within Rru_A0401 at 478.897 kb on - strand, within Rru_A0401 at 478.897 kb on - strand, within Rru_A0401 at 479.351 kb on + strand, within Rru_A0402 at 479.432 kb on + strand, within Rru_A0402 at 479.432 kb on + strand, within Rru_A0402 at 479.432 kb on + strand, within Rru_A0402 at 479.432 kb on + strand, within Rru_A0402 at 479.432 kb on + strand, within Rru_A0402 at 479.433 kb on - strand, within Rru_A0402 at 479.433 kb on - strand, within Rru_A0402 at 479.433 kb on - strand, within Rru_A0402 at 479.433 kb on - strand, within Rru_A0402 at 479.433 kb on - strand, within Rru_A0402 at 479.435 kb on + strand, within Rru_A0402 at 479.436 kb on - strand, within Rru_A0402 at 479.436 kb on - strand, within Rru_A0402
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 476,033 + Rru_A0398 0.88 +0.0 476,034 - Rru_A0398 0.88 -2.2 476,034 - Rru_A0398 0.88 -0.8 476,111 - -1.3 476,111 - +0.1 476,112 + +1.0 476,112 + +2.0 476,113 - -0.3 476,113 - -3.1 476,194 + Rru_A0399 0.12 +2.0 476,195 - Rru_A0399 0.12 +2.0 476,221 + Rru_A0399 0.15 -1.0 476,256 + Rru_A0399 0.20 +0.0 476,256 + Rru_A0399 0.20 +2.0 476,560 - Rru_A0399 0.61 +1.0 476,778 - -0.6 476,836 - -1.1 476,961 + -1.3 476,961 + +0.0 476,961 + +0.9 476,962 - -0.8 476,975 + -1.8 476,975 + -0.9 476,975 + +1.4 476,975 + -1.4 476,976 - -2.1 477,068 + -1.4 477,068 + -0.6 477,068 + +0.1 477,069 - +2.0 477,069 - -0.1 477,069 - +0.2 477,069 - +0.4 477,337 + Rru_A0400 0.24 +1.9 477,338 - Rru_A0400 0.24 -2.7 477,338 - Rru_A0400 0.24 -1.1 477,338 - Rru_A0400 0.24 +2.8 477,457 + Rru_A0400 0.32 -1.0 477,457 + Rru_A0400 0.32 -0.6 477,457 + Rru_A0400 0.32 +0.1 477,458 - Rru_A0400 0.32 +1.0 477,481 + Rru_A0400 0.34 -2.2 477,481 + Rru_A0400 0.34 -1.7 477,482 - Rru_A0400 0.34 -0.3 477,482 - Rru_A0400 0.34 -0.3 477,482 - Rru_A0400 0.34 -0.3 477,558 + Rru_A0400 0.39 +1.2 477,559 - Rru_A0400 0.39 +2.0 478,000 + Rru_A0400 0.70 +0.1 478,174 + Rru_A0400 0.82 +0.3 478,175 - Rru_A0400 0.82 -1.6 478,375 + +2.0 478,375 + -2.2 478,375 + -0.3 478,375 + -0.8 478,375 + -2.4 478,375 + +0.4 478,375 + -0.3 478,376 - -2.2 478,376 - -0.8 478,376 - -0.5 478,376 - -0.6 478,376 - -1.3 478,684 - Rru_A0401 0.17 +0.2 478,897 - Rru_A0401 0.48 -1.0 478,897 - Rru_A0401 0.48 -2.0 479,351 + Rru_A0402 0.15 -0.6 479,432 + Rru_A0402 0.29 +0.2 479,432 + Rru_A0402 0.29 -1.6 479,432 + Rru_A0402 0.29 -1.8 479,432 + Rru_A0402 0.29 -0.8 479,432 + Rru_A0402 0.29 -0.6 479,433 - Rru_A0402 0.29 +0.4 479,433 - Rru_A0402 0.29 +0.1 479,433 - Rru_A0402 0.29 -3.1 479,433 - Rru_A0402 0.29 -0.6 479,433 - Rru_A0402 0.29 +0.9 479,435 + Rru_A0402 0.29 -2.6 479,436 - Rru_A0402 0.30 -1.7 479,436 - Rru_A0402 0.30 +3.8
Or see this region's nucleotide sequence