Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0381 and Rru_A0382 are separated by 69 nucleotides Rru_A0382 and Rru_A0383 are separated by 135 nucleotides Rru_A0383 and Rru_A0384 are separated by 130 nucleotides
Rru_A0381: Rru_A0381 - Major facilitator superfamily transporter MFS_1 (NCBI), at 458,807 to 460,051
_A0381
Rru_A0382: Rru_A0382 - Transcriptional Regulator, MerR family (NCBI), at 460,121 to 460,585
_A0382
Rru_A0383: Rru_A0383 - SH3 domain protein (NCBI), at 460,721 to 461,086
_A0383
Rru_A0384: Rru_A0384 - NADPH-quinone reductase (NCBI), at 461,217 to 462,236
_A0384
Position (kb) 460
461
462 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 459.815 kb on + strand, within Rru_A0381 at 459.816 kb on - strand, within Rru_A0381 at 459.816 kb on - strand, within Rru_A0381 at 459.816 kb on - strand, within Rru_A0381 at 459.877 kb on - strand, within Rru_A0381 at 460.004 kb on - strand at 460.051 kb on + strand at 460.052 kb on - strand at 460.184 kb on + strand, within Rru_A0382 at 460.185 kb on - strand, within Rru_A0382 at 460.474 kb on + strand, within Rru_A0382 at 460.475 kb on - strand, within Rru_A0382 at 460.475 kb on - strand, within Rru_A0382 at 460.637 kb on + strand at 460.737 kb on - strand at 460.737 kb on - strand at 460.821 kb on - strand, within Rru_A0383 at 460.821 kb on - strand, within Rru_A0383 at 460.821 kb on - strand, within Rru_A0383 at 460.821 kb on - strand, within Rru_A0383 at 460.850 kb on + strand, within Rru_A0383 at 460.850 kb on + strand, within Rru_A0383 at 460.850 kb on + strand, within Rru_A0383 at 461.001 kb on + strand, within Rru_A0383 at 461.002 kb on - strand, within Rru_A0383 at 461.067 kb on + strand at 461.067 kb on + strand at 461.068 kb on - strand at 461.084 kb on + strand at 461.084 kb on + strand at 461.093 kb on - strand at 461.185 kb on + strand at 461.365 kb on - strand, within Rru_A0384 at 461.365 kb on - strand, within Rru_A0384 at 461.505 kb on + strand, within Rru_A0384 at 461.505 kb on + strand, within Rru_A0384 at 461.506 kb on - strand, within Rru_A0384 at 461.553 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.562 kb on + strand, within Rru_A0384 at 461.563 kb on - strand, within Rru_A0384 at 461.563 kb on - strand, within Rru_A0384 at 461.883 kb on + strand, within Rru_A0384 at 461.884 kb on - strand, within Rru_A0384 at 461.884 kb on - strand, within Rru_A0384
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 459,815 + Rru_A0381 0.81 -2.4 459,816 - Rru_A0381 0.81 +1.1 459,816 - Rru_A0381 0.81 -0.3 459,816 - Rru_A0381 0.81 -1.2 459,877 - Rru_A0381 0.86 -0.3 460,004 - +0.4 460,051 + -2.3 460,052 - +0.4 460,184 + Rru_A0382 0.14 -2.6 460,185 - Rru_A0382 0.14 +1.9 460,474 + Rru_A0382 0.76 -1.2 460,475 - Rru_A0382 0.76 +0.4 460,475 - Rru_A0382 0.76 -0.8 460,637 + +0.6 460,737 - -0.8 460,737 - -2.1 460,821 - Rru_A0383 0.27 +1.6 460,821 - Rru_A0383 0.27 +1.2 460,821 - Rru_A0383 0.27 -1.1 460,821 - Rru_A0383 0.27 +1.7 460,850 + Rru_A0383 0.35 -1.0 460,850 + Rru_A0383 0.35 -0.3 460,850 + Rru_A0383 0.35 +0.4 461,001 + Rru_A0383 0.77 +0.8 461,002 - Rru_A0383 0.77 +1.6 461,067 + +1.5 461,067 + -3.0 461,068 - +2.0 461,084 + +0.5 461,084 + +0.0 461,093 - -1.7 461,185 + -3.1 461,365 - Rru_A0384 0.15 -0.6 461,365 - Rru_A0384 0.15 -1.0 461,505 + Rru_A0384 0.28 -0.1 461,505 + Rru_A0384 0.28 +1.6 461,506 - Rru_A0384 0.28 -2.1 461,553 + Rru_A0384 0.33 -1.1 461,562 + Rru_A0384 0.34 +2.3 461,562 + Rru_A0384 0.34 +1.4 461,562 + Rru_A0384 0.34 -0.9 461,562 + Rru_A0384 0.34 -1.3 461,562 + Rru_A0384 0.34 -1.4 461,563 - Rru_A0384 0.34 -1.3 461,563 - Rru_A0384 0.34 +0.5 461,883 + Rru_A0384 0.65 -1.3 461,884 - Rru_A0384 0.65 -2.1 461,884 - Rru_A0384 0.65 +0.4
Or see this region's nucleotide sequence