Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0366

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0364 and Rru_A0365 are separated by 361 nucleotidesRru_A0365 and Rru_A0366 are separated by 1 nucleotidesRru_A0366 and Rru_A0367 are separated by 192 nucleotidesRru_A0367 and Rru_A0368 are separated by 32 nucleotides Rru_A0364: Rru_A0364 - ubiquinol-cytochrome c reductase, iron-sulfur subunit (NCBI), at 438,597 to 439,148 _A0364 Rru_A0365: Rru_A0365 - tRNA/rRNA methyltransferase (SpoU) (NCBI), at 439,510 to 439,992 _A0365 Rru_A0366: Rru_A0366 - Polynucleotide adenylyltransferase region (NCBI), at 439,994 to 441,571 _A0366 Rru_A0367: Rru_A0367 - NUDIX hydrolase (NCBI), at 441,764 to 442,495 _A0367 Rru_A0368: Rru_A0368 - Protein of unknown function DUF1285 (NCBI), at 442,528 to 443,127 _A0368 Position (kb) 439 440 441 442Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 439.226 kb on - strandat 439.247 kb on - strandat 439.322 kb on - strandat 439.428 kb on + strandat 439.429 kb on - strandat 439.431 kb on - strandat 439.431 kb on - strandat 439.431 kb on - strandat 439.431 kb on - strandat 439.520 kb on + strandat 439.520 kb on + strandat 439.528 kb on + strandat 439.529 kb on - strandat 439.529 kb on - strandat 439.562 kb on + strand, within Rru_A0365at 439.562 kb on + strand, within Rru_A0365at 439.562 kb on + strand, within Rru_A0365at 439.563 kb on - strand, within Rru_A0365at 439.563 kb on - strand, within Rru_A0365at 439.566 kb on - strand, within Rru_A0365at 439.604 kb on + strand, within Rru_A0365at 439.605 kb on - strand, within Rru_A0365at 439.605 kb on - strand, within Rru_A0365at 439.605 kb on - strand, within Rru_A0365at 439.640 kb on + strand, within Rru_A0365at 439.660 kb on + strand, within Rru_A0365at 439.661 kb on - strand, within Rru_A0365at 439.995 kb on + strandat 439.995 kb on + strandat 439.995 kb on + strandat 439.995 kb on + strandat 439.996 kb on - strandat 439.996 kb on - strandat 439.996 kb on - strandat 439.996 kb on - strandat 439.996 kb on - strandat 439.997 kb on + strandat 441.446 kb on - strandat 441.536 kb on + strandat 441.536 kb on + strandat 441.536 kb on + strandat 441.538 kb on + strandat 441.538 kb on + strandat 441.538 kb on + strandat 441.538 kb on + strandat 441.538 kb on + strandat 441.538 kb on + strandat 441.539 kb on - strandat 441.539 kb on - strandat 441.539 kb on - strandat 441.571 kb on + strandat 441.571 kb on + strandat 441.572 kb on - strandat 441.572 kb on - strandat 441.572 kb on - strandat 441.579 kb on + strandat 441.579 kb on + strandat 441.579 kb on + strandat 441.580 kb on - strandat 441.580 kb on - strandat 441.580 kb on - strandat 441.580 kb on - strandat 441.580 kb on - strandat 441.844 kb on + strand, within Rru_A0367at 441.844 kb on + strand, within Rru_A0367at 441.844 kb on + strand, within Rru_A0367at 441.844 kb on + strand, within Rru_A0367at 441.845 kb on - strand, within Rru_A0367at 441.845 kb on - strand, within Rru_A0367at 441.845 kb on - strand, within Rru_A0367at 441.846 kb on + strand, within Rru_A0367at 441.846 kb on + strand, within Rru_A0367at 441.846 kb on + strand, within Rru_A0367at 441.846 kb on + strand, within Rru_A0367at 441.846 kb on + strand, within Rru_A0367at 441.846 kb on + strand, within Rru_A0367at 441.846 kb on + strand, within Rru_A0367at 441.846 kb on + strand, within Rru_A0367at 441.847 kb on - strand, within Rru_A0367at 441.847 kb on - strand, within Rru_A0367at 441.847 kb on - strand, within Rru_A0367at 441.847 kb on - strand, within Rru_A0367at 441.870 kb on + strand, within Rru_A0367at 441.870 kb on + strand, within Rru_A0367at 441.870 kb on + strand, within Rru_A0367at 441.870 kb on + strand, within Rru_A0367at 441.871 kb on - strand, within Rru_A0367at 441.871 kb on - strand, within Rru_A0367at 442.050 kb on + strand, within Rru_A0367at 442.050 kb on + strand, within Rru_A0367at 442.051 kb on - strand, within Rru_A0367at 442.051 kb on - strand, within Rru_A0367at 442.051 kb on - strand, within Rru_A0367at 442.092 kb on - strand, within Rru_A0367at 442.388 kb on + strand, within Rru_A0367at 442.389 kb on - strand, within Rru_A0367at 442.529 kb on + strandat 442.529 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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439,226 - -2.6
439,247 - +2.2
439,322 - -0.6
439,428 + +0.0
439,429 - +0.6
439,431 - +1.2
439,431 - -0.3
439,431 - +2.0
439,431 - -1.0
439,520 + -2.7
439,520 + -0.3
439,528 + +2.0
439,529 - +0.0
439,529 - -0.4
439,562 + Rru_A0365 0.11 +1.0
439,562 + Rru_A0365 0.11 +0.0
439,562 + Rru_A0365 0.11 +1.6
439,563 - Rru_A0365 0.11 +2.0
439,563 - Rru_A0365 0.11 +1.0
439,566 - Rru_A0365 0.12 -2.1
439,604 + Rru_A0365 0.19 -0.6
439,605 - Rru_A0365 0.20 -3.0
439,605 - Rru_A0365 0.20 +1.0
439,605 - Rru_A0365 0.20 -1.1
439,640 + Rru_A0365 0.27 +0.7
439,660 + Rru_A0365 0.31 -1.0
439,661 - Rru_A0365 0.31 +0.0
439,995 + +0.5
439,995 + -1.3
439,995 + -2.8
439,995 + +0.0
439,996 - -2.7
439,996 - -1.1
439,996 - +1.0
439,996 - +4.4
439,996 - +2.2
439,997 + -0.1
441,446 - +2.0
441,536 + +0.6
441,536 + -2.7
441,536 + +0.0
441,538 + -0.1
441,538 + -2.4
441,538 + +0.8
441,538 + -0.7
441,538 + -0.6
441,538 + +1.1
441,539 - -1.2
441,539 - +2.0
441,539 - -1.1
441,571 + +4.4
441,571 + +2.0
441,572 - +1.3
441,572 - +1.6
441,572 - +0.6
441,579 + -0.3
441,579 + -1.7
441,579 + -0.2
441,580 - +0.1
441,580 - +1.3
441,580 - +0.2
441,580 - +0.8
441,580 - -3.1
441,844 + Rru_A0367 0.11 +2.0
441,844 + Rru_A0367 0.11 +0.8
441,844 + Rru_A0367 0.11 +1.2
441,844 + Rru_A0367 0.11 +0.1
441,845 - Rru_A0367 0.11 -1.4
441,845 - Rru_A0367 0.11 +1.9
441,845 - Rru_A0367 0.11 +1.0
441,846 + Rru_A0367 0.11 -1.3
441,846 + Rru_A0367 0.11 +0.9
441,846 + Rru_A0367 0.11 +3.3
441,846 + Rru_A0367 0.11 -1.3
441,846 + Rru_A0367 0.11 +1.5
441,846 + Rru_A0367 0.11 -1.2
441,846 + Rru_A0367 0.11 +1.3
441,846 + Rru_A0367 0.11 -1.5
441,847 - Rru_A0367 0.11 -0.1
441,847 - Rru_A0367 0.11 +2.0
441,847 - Rru_A0367 0.11 -2.6
441,847 - Rru_A0367 0.11 -1.7
441,870 + Rru_A0367 0.14 +1.5
441,870 + Rru_A0367 0.14 -0.8
441,870 + Rru_A0367 0.14 -1.3
441,870 + Rru_A0367 0.14 -2.1
441,871 - Rru_A0367 0.15 +2.4
441,871 - Rru_A0367 0.15 +3.0
442,050 + Rru_A0367 0.39 +1.1
442,050 + Rru_A0367 0.39 -0.9
442,051 - Rru_A0367 0.39 +1.4
442,051 - Rru_A0367 0.39 -3.6
442,051 - Rru_A0367 0.39 -0.1
442,092 - Rru_A0367 0.45 -1.6
442,388 + Rru_A0367 0.85 +2.4
442,389 - Rru_A0367 0.85 -1.4
442,529 + +2.6
442,529 + -2.1

Or see this region's nucleotide sequence