Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0362

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0361 and Rru_A0362 are separated by 180 nucleotidesRru_A0362 and Rru_A0363 are separated by 26 nucleotides Rru_A0361: Rru_A0361 - Methylthioadenosine phosphorylase (NCBI), at 435,456 to 436,340 _A0361 Rru_A0362: Rru_A0362 - Cytochrome c1 (NCBI), at 436,521 to 437,339 _A0362 Rru_A0363: Rru_A0363 - Cytochrome b/b6-like (NCBI), at 437,366 to 438,583 _A0363 Position (kb) 436 437 438Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 435.574 kb on + strand, within Rru_A0361at 435.727 kb on + strand, within Rru_A0361at 435.856 kb on + strand, within Rru_A0361at 435.856 kb on + strand, within Rru_A0361at 435.857 kb on - strand, within Rru_A0361at 435.857 kb on - strand, within Rru_A0361at 435.857 kb on - strand, within Rru_A0361at 436.280 kb on + strandat 436.285 kb on + strandat 436.286 kb on - strandat 436.286 kb on - strandat 436.286 kb on - strandat 436.389 kb on + strandat 436.389 kb on + strandat 436.390 kb on - strandat 436.522 kb on + strandat 436.886 kb on - strand, within Rru_A0362

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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435,574 + Rru_A0361 0.13 -0.6
435,727 + Rru_A0361 0.31 -2.6
435,856 + Rru_A0361 0.45 +0.3
435,856 + Rru_A0361 0.45 +1.6
435,857 - Rru_A0361 0.45 +1.0
435,857 - Rru_A0361 0.45 +0.0
435,857 - Rru_A0361 0.45 +0.0
436,280 + +0.4
436,285 + -0.6
436,286 - -0.3
436,286 - +5.1
436,286 - +1.0
436,389 + +2.1
436,389 + -0.3
436,390 - +3.6
436,522 + -0.1
436,886 - Rru_A0362 0.45 +2.0

Or see this region's nucleotide sequence