Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0355 and Rru_A0356 are separated by 155 nucleotides Rru_A0356 and Rru_A0357 are separated by 244 nucleotides Rru_A0357 and Rru_A0358 are separated by 82 nucleotides
Rru_A0355: Rru_A0355 - Glutamine amidotransferase class-I (NCBI), at 428,986 to 430,563
_A0355
Rru_A0356: Rru_A0356 - Isocitrate dehydrogenase (NCBI), at 430,719 to 431,936
_A0356
Rru_A0357: Rru_A0357 - hypothetical protein (NCBI), at 432,181 to 432,777
_A0357
Rru_A0358: Rru_A0358 - Heme oxygenase (NCBI), at 432,860 to 433,519
_A0358
Position (kb) 430
431
432 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 430.618 kb on - strand at 432.042 kb on - strand at 432.042 kb on - strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.123 kb on + strand at 432.124 kb on - strand at 432.124 kb on - strand at 432.127 kb on + strand at 432.127 kb on + strand at 432.127 kb on + strand at 432.127 kb on + strand at 432.127 kb on + strand at 432.127 kb on + strand at 432.127 kb on + strand at 432.128 kb on - strand at 432.280 kb on - strand, within Rru_A0357 at 432.280 kb on - strand, within Rru_A0357 at 432.281 kb on + strand, within Rru_A0357 at 432.281 kb on + strand, within Rru_A0357 at 432.282 kb on - strand, within Rru_A0357 at 432.282 kb on - strand, within Rru_A0357 at 432.356 kb on + strand, within Rru_A0357 at 432.717 kb on - strand, within Rru_A0357 at 432.717 kb on - strand, within Rru_A0357 at 432.861 kb on + strand at 432.861 kb on + strand at 432.861 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 430,618 - +0.6 432,042 - +0.6 432,042 - +0.3 432,123 + -2.3 432,123 + -0.5 432,123 + -0.1 432,123 + -4.7 432,123 + +0.5 432,123 + -2.9 432,123 + +0.8 432,123 + -3.2 432,123 + +0.0 432,123 + +1.3 432,123 + +0.5 432,124 - +3.0 432,124 - -2.1 432,127 + -2.7 432,127 + -0.1 432,127 + +1.4 432,127 + -2.4 432,127 + -0.6 432,127 + -0.2 432,127 + +0.0 432,128 - -1.2 432,280 - Rru_A0357 0.17 -1.9 432,280 - Rru_A0357 0.17 -1.5 432,281 + Rru_A0357 0.17 -2.7 432,281 + Rru_A0357 0.17 -2.2 432,282 - Rru_A0357 0.17 +0.0 432,282 - Rru_A0357 0.17 -1.9 432,356 + Rru_A0357 0.29 -1.0 432,717 - Rru_A0357 0.90 +0.5 432,717 - Rru_A0357 0.90 -3.4 432,861 + -1.1 432,861 + -1.7 432,861 + -2.4
Or see this region's nucleotide sequence