Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0355

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0354 and Rru_A0355 are separated by 305 nucleotidesRru_A0355 and Rru_A0356 are separated by 155 nucleotides Rru_A0354: Rru_A0354 - Phage integrase (NCBI), at 427,472 to 428,680 _A0354 Rru_A0355: Rru_A0355 - Glutamine amidotransferase class-I (NCBI), at 428,986 to 430,563 _A0355 Rru_A0356: Rru_A0356 - Isocitrate dehydrogenase (NCBI), at 430,719 to 431,936 _A0356 Position (kb) 428 429 430 431Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 428.037 kb on + strand, within Rru_A0354at 428.037 kb on + strand, within Rru_A0354at 428.038 kb on - strand, within Rru_A0354at 428.038 kb on - strand, within Rru_A0354at 428.038 kb on - strand, within Rru_A0354at 428.044 kb on - strand, within Rru_A0354at 428.167 kb on - strand, within Rru_A0354at 428.559 kb on + strand, within Rru_A0354at 428.560 kb on - strandat 428.560 kb on - strandat 428.560 kb on - strandat 428.601 kb on - strandat 428.601 kb on - strandat 428.601 kb on - strandat 428.604 kb on + strandat 428.604 kb on + strandat 428.707 kb on - strandat 428.847 kb on - strandat 428.938 kb on + strandat 430.618 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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428,037 + Rru_A0354 0.47 -0.3
428,037 + Rru_A0354 0.47 +0.5
428,038 - Rru_A0354 0.47 +2.0
428,038 - Rru_A0354 0.47 -0.3
428,038 - Rru_A0354 0.47 +1.0
428,044 - Rru_A0354 0.47 -0.1
428,167 - Rru_A0354 0.57 +1.8
428,559 + Rru_A0354 0.90 -0.6
428,560 - +1.2
428,560 - +1.0
428,560 - +1.7
428,601 - +1.0
428,601 - -0.5
428,601 - +2.0
428,604 + +0.0
428,604 + -2.7
428,707 - -3.7
428,847 - +0.7
428,938 + -1.4
430,618 - +0.6

Or see this region's nucleotide sequence