Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0353 and Rru_A0354 are separated by 932 nucleotides Rru_A0354 and Rru_A0355 are separated by 305 nucleotides
Rru_A0353: Rru_A0353 - Phage Transcriptional Regulator, AlpA (NCBI), at 426,330 to 426,539
_A0353
Rru_A0354: Rru_A0354 - Phage integrase (NCBI), at 427,472 to 428,680
_A0354
Rru_A0355: Rru_A0355 - Glutamine amidotransferase class-I (NCBI), at 428,986 to 430,563
_A0355
Position (kb) 427
428
429 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 426.708 kb on + strand at 426.708 kb on + strand at 426.726 kb on - strand at 426.748 kb on + strand at 426.749 kb on - strand at 426.750 kb on + strand at 426.750 kb on + strand at 426.750 kb on + strand at 426.750 kb on + strand at 426.750 kb on + strand at 426.750 kb on + strand at 426.750 kb on + strand at 426.751 kb on - strand at 426.751 kb on - strand at 426.751 kb on - strand at 426.822 kb on - strand at 426.873 kb on - strand at 426.873 kb on - strand at 426.906 kb on - strand at 426.916 kb on + strand at 426.916 kb on + strand at 426.976 kb on + strand at 426.976 kb on + strand at 426.977 kb on - strand at 426.977 kb on - strand at 426.977 kb on - strand at 426.977 kb on - strand at 426.979 kb on + strand at 426.980 kb on - strand at 427.043 kb on + strand at 427.044 kb on - strand at 427.139 kb on - strand at 427.186 kb on + strand at 427.187 kb on - strand at 427.253 kb on + strand at 427.254 kb on - strand at 427.257 kb on + strand at 427.258 kb on - strand at 427.403 kb on + strand at 427.404 kb on - strand at 427.404 kb on - strand at 427.448 kb on + strand at 427.473 kb on + strand at 427.474 kb on - strand at 427.570 kb on + strand at 427.571 kb on - strand at 427.571 kb on - strand at 427.571 kb on - strand at 427.571 kb on - strand at 427.572 kb on + strand at 427.573 kb on - strand at 427.628 kb on - strand, within Rru_A0354 at 427.632 kb on + strand, within Rru_A0354 at 427.725 kb on + strand, within Rru_A0354 at 427.726 kb on - strand, within Rru_A0354 at 427.726 kb on - strand, within Rru_A0354 at 427.801 kb on - strand, within Rru_A0354 at 427.801 kb on - strand, within Rru_A0354 at 427.801 kb on - strand, within Rru_A0354 at 427.801 kb on - strand, within Rru_A0354 at 428.037 kb on + strand, within Rru_A0354 at 428.037 kb on + strand, within Rru_A0354 at 428.038 kb on - strand, within Rru_A0354 at 428.038 kb on - strand, within Rru_A0354 at 428.038 kb on - strand, within Rru_A0354 at 428.044 kb on - strand, within Rru_A0354 at 428.167 kb on - strand, within Rru_A0354 at 428.559 kb on + strand, within Rru_A0354 at 428.560 kb on - strand at 428.560 kb on - strand at 428.560 kb on - strand at 428.601 kb on - strand at 428.601 kb on - strand at 428.601 kb on - strand at 428.604 kb on + strand at 428.604 kb on + strand at 428.707 kb on - strand at 428.847 kb on - strand at 428.938 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 426,708 + -0.1 426,708 + -1.5 426,726 - -1.1 426,748 + -0.1 426,749 - -2.0 426,750 + +1.4 426,750 + -0.5 426,750 + -0.0 426,750 + +2.0 426,750 + +0.7 426,750 + +0.8 426,750 + +0.2 426,751 - -1.8 426,751 - +0.5 426,751 - -0.3 426,822 - -2.0 426,873 - +1.3 426,873 - -0.8 426,906 - +0.5 426,916 + +0.7 426,916 + -1.1 426,976 + +2.5 426,976 + +0.7 426,977 - +1.6 426,977 - +0.2 426,977 - +0.7 426,977 - -2.0 426,979 + +0.3 426,980 - +0.5 427,043 + -0.4 427,044 - -0.3 427,139 - +1.4 427,186 + -0.3 427,187 - +1.0 427,253 + -1.3 427,254 - -2.0 427,257 + -1.1 427,258 - -0.5 427,403 + -0.9 427,404 - -0.1 427,404 - +1.5 427,448 + +2.0 427,473 + -0.8 427,474 - +1.0 427,570 + +1.0 427,571 - +0.5 427,571 - +1.0 427,571 - -1.1 427,571 - -0.2 427,572 + +0.9 427,573 - -1.0 427,628 - Rru_A0354 0.13 -1.5 427,632 + Rru_A0354 0.13 +0.8 427,725 + Rru_A0354 0.21 +2.3 427,726 - Rru_A0354 0.21 -0.5 427,726 - Rru_A0354 0.21 +2.0 427,801 - Rru_A0354 0.27 -1.1 427,801 - Rru_A0354 0.27 +0.9 427,801 - Rru_A0354 0.27 +0.5 427,801 - Rru_A0354 0.27 -0.8 428,037 + Rru_A0354 0.47 -0.3 428,037 + Rru_A0354 0.47 +0.5 428,038 - Rru_A0354 0.47 +2.0 428,038 - Rru_A0354 0.47 -0.3 428,038 - Rru_A0354 0.47 +1.0 428,044 - Rru_A0354 0.47 -0.1 428,167 - Rru_A0354 0.57 +1.8 428,559 + Rru_A0354 0.90 -0.6 428,560 - +1.2 428,560 - +1.0 428,560 - +1.7 428,601 - +1.0 428,601 - -0.5 428,601 - +2.0 428,604 + +0.0 428,604 + -2.7 428,707 - -3.7 428,847 - +0.7 428,938 + -1.4
Or see this region's nucleotide sequence