Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0352 and Rru_A0353 are separated by 221 nucleotides Rru_A0353 and Rru_A0354 are separated by 932 nucleotides
Rru_A0352: Rru_A0352 - RepA (NCBI), at 425,278 to 426,108
_A0352
Rru_A0353: Rru_A0353 - Phage Transcriptional Regulator, AlpA (NCBI), at 426,330 to 426,539
_A0353
Rru_A0354: Rru_A0354 - Phage integrase (NCBI), at 427,472 to 428,680
_A0354
Position (kb) 426
427 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 425.411 kb on + strand, within Rru_A0352 at 425.411 kb on + strand, within Rru_A0352 at 425.418 kb on + strand, within Rru_A0352 at 425.419 kb on - strand, within Rru_A0352 at 425.419 kb on - strand, within Rru_A0352 at 425.419 kb on - strand, within Rru_A0352 at 425.419 kb on - strand, within Rru_A0352 at 425.419 kb on - strand, within Rru_A0352 at 425.441 kb on + strand, within Rru_A0352 at 425.441 kb on + strand, within Rru_A0352 at 425.442 kb on - strand, within Rru_A0352 at 425.600 kb on + strand, within Rru_A0352 at 425.600 kb on + strand, within Rru_A0352 at 425.600 kb on + strand, within Rru_A0352 at 425.637 kb on - strand, within Rru_A0352 at 425.858 kb on + strand, within Rru_A0352 at 425.858 kb on + strand, within Rru_A0352 at 425.858 kb on + strand, within Rru_A0352 at 425.858 kb on + strand, within Rru_A0352 at 425.858 kb on + strand, within Rru_A0352 at 425.858 kb on + strand, within Rru_A0352 at 425.859 kb on - strand, within Rru_A0352 at 425.859 kb on - strand, within Rru_A0352 at 425.859 kb on - strand, within Rru_A0352 at 425.859 kb on - strand, within Rru_A0352 at 425.903 kb on + strand, within Rru_A0352 at 425.904 kb on - strand, within Rru_A0352 at 425.904 kb on - strand, within Rru_A0352 at 425.975 kb on + strand, within Rru_A0352 at 425.976 kb on - strand, within Rru_A0352 at 426.063 kb on + strand at 426.063 kb on + strand at 426.064 kb on - strand at 426.064 kb on - strand at 426.290 kb on + strand at 426.319 kb on + strand at 426.319 kb on + strand at 426.320 kb on - strand at 426.320 kb on - strand at 426.321 kb on + strand at 426.321 kb on + strand at 426.321 kb on + strand at 426.321 kb on + strand at 426.322 kb on - strand at 426.322 kb on - strand at 426.708 kb on + strand at 426.708 kb on + strand at 426.726 kb on - strand at 426.748 kb on + strand at 426.749 kb on - strand at 426.750 kb on + strand at 426.750 kb on + strand at 426.750 kb on + strand at 426.750 kb on + strand at 426.750 kb on + strand at 426.750 kb on + strand at 426.750 kb on + strand at 426.751 kb on - strand at 426.751 kb on - strand at 426.751 kb on - strand at 426.822 kb on - strand at 426.873 kb on - strand at 426.873 kb on - strand at 426.906 kb on - strand at 426.916 kb on + strand at 426.916 kb on + strand at 426.976 kb on + strand at 426.976 kb on + strand at 426.977 kb on - strand at 426.977 kb on - strand at 426.977 kb on - strand at 426.977 kb on - strand at 426.979 kb on + strand at 426.980 kb on - strand at 427.043 kb on + strand at 427.044 kb on - strand at 427.139 kb on - strand at 427.186 kb on + strand at 427.187 kb on - strand at 427.253 kb on + strand at 427.254 kb on - strand at 427.257 kb on + strand at 427.258 kb on - strand at 427.403 kb on + strand at 427.404 kb on - strand at 427.404 kb on - strand at 427.448 kb on + strand at 427.473 kb on + strand at 427.474 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 425,411 + Rru_A0352 0.16 -0.5 425,411 + Rru_A0352 0.16 +1.5 425,418 + Rru_A0352 0.17 +0.4 425,419 - Rru_A0352 0.17 +1.2 425,419 - Rru_A0352 0.17 +4.7 425,419 - Rru_A0352 0.17 -1.0 425,419 - Rru_A0352 0.17 -0.9 425,419 - Rru_A0352 0.17 -0.3 425,441 + Rru_A0352 0.20 -0.9 425,441 + Rru_A0352 0.20 +0.9 425,442 - Rru_A0352 0.20 +1.0 425,600 + Rru_A0352 0.39 -2.8 425,600 + Rru_A0352 0.39 +3.6 425,600 + Rru_A0352 0.39 -0.8 425,637 - Rru_A0352 0.43 +1.6 425,858 + Rru_A0352 0.70 +0.0 425,858 + Rru_A0352 0.70 -2.5 425,858 + Rru_A0352 0.70 +2.0 425,858 + Rru_A0352 0.70 -2.8 425,858 + Rru_A0352 0.70 -2.7 425,858 + Rru_A0352 0.70 -1.4 425,859 - Rru_A0352 0.70 +0.5 425,859 - Rru_A0352 0.70 +2.0 425,859 - Rru_A0352 0.70 -0.2 425,859 - Rru_A0352 0.70 +0.2 425,903 + Rru_A0352 0.75 -3.3 425,904 - Rru_A0352 0.75 +0.5 425,904 - Rru_A0352 0.75 +2.0 425,975 + Rru_A0352 0.84 -2.5 425,976 - Rru_A0352 0.84 +0.3 426,063 + -2.0 426,063 + -0.8 426,064 - -0.0 426,064 - -0.1 426,290 + -2.3 426,319 + +3.0 426,319 + +2.0 426,320 - +0.5 426,320 - +3.9 426,321 + -1.0 426,321 + +0.5 426,321 + -1.9 426,321 + +1.3 426,322 - -0.8 426,322 - +2.0 426,708 + -0.1 426,708 + -1.5 426,726 - -1.1 426,748 + -0.1 426,749 - -2.0 426,750 + +1.4 426,750 + -0.5 426,750 + -0.0 426,750 + +2.0 426,750 + +0.7 426,750 + +0.8 426,750 + +0.2 426,751 - -1.8 426,751 - +0.5 426,751 - -0.3 426,822 - -2.0 426,873 - +1.3 426,873 - -0.8 426,906 - +0.5 426,916 + +0.7 426,916 + -1.1 426,976 + +2.5 426,976 + +0.7 426,977 - +1.6 426,977 - +0.2 426,977 - +0.7 426,977 - -2.0 426,979 + +0.3 426,980 - +0.5 427,043 + -0.4 427,044 - -0.3 427,139 - +1.4 427,186 + -0.3 427,187 - +1.0 427,253 + -1.3 427,254 - -2.0 427,257 + -1.1 427,258 - -0.5 427,403 + -0.9 427,404 - -0.1 427,404 - +1.5 427,448 + +2.0 427,473 + -0.8 427,474 - +1.0
Or see this region's nucleotide sequence