Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0349

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt11723412 and 11438658 are separated by 0 nucleotides11438658 and 11581021 overlap by 33 nucleotides11581021 and 11723413 overlap by 33 nucleotides11723413 and 11438659 are separated by 0 nucleotides11438659 and 11581022 overlap by 28 nucleotides11581022 and 11723414 overlap by 28 nucleotides11723414 and 11438660 are separated by 0 nucleotides11438660 and 11581023 overlap by 33 nucleotides11581023 and 11723415 overlap by 33 nucleotides11723415 and 11438661 are separated by 0 nucleotides11438661 and 11581024 overlap by 28 nucleotides11581024 and 11723416 overlap by 28 nucleotides11723416 and 11438662 are separated by 0 nucleotides11438662 and 11581025 overlap by 33 nucleotides11581025 and 11723417 overlap by 33 nucleotides11723417 and 11438663 are separated by 0 nucleotides11438663 and 11581026 overlap by 28 nucleotides11581026 and 11723418 overlap by 28 nucleotides11723418 and 11438664 are separated by 0 nucleotides11438664 and 11581027 overlap by 33 nucleotides11581027 and 11723419 overlap by 33 nucleotides11723419 and 11438665 are separated by 0 nucleotides11438665 and 11581028 overlap by 28 nucleotides11581028 and 11723420 overlap by 28 nucleotides11723420 and 11438666 are separated by 0 nucleotides11438666 and 11581029 overlap by 33 nucleotides11581029 and 11723421 overlap by 33 nucleotides11723421 and 11438667 are separated by 0 nucleotides11438667 and 11581030 overlap by 28 nucleotides11581030 and 11723422 overlap by 28 nucleotides11723422 and 11438668 are separated by 0 nucleotides11438668 and 11581031 overlap by 33 nucleotides11581031 and 11723423 overlap by 33 nucleotides11723423 and 11438669 are separated by 0 nucleotides11438669 and 11581032 overlap by 28 nucleotides11581032 and 11723424 overlap by 28 nucleotides11723424 and 11438670 are separated by 0 nucleotides11438670 and 11581033 overlap by 35 nucleotides11581033 and 11723425 overlap by 35 nucleotides11723425 and 11438671 are separated by 0 nucleotides11438671 and 11581034 overlap by 28 nucleotides11581034 and 11723426 overlap by 28 nucleotides11723426 and 11438672 are separated by 0 nucleotides11438672 and 11581035 overlap by 33 nucleotides11581035 and 11723427 overlap by 33 nucleotides11723427 and 11438673 are separated by 0 nucleotides11438673 and 11581036 overlap by 28 nucleotides11581036 and 11723428 overlap by 28 nucleotides11723428 and 11438674 are separated by 0 nucleotides11438674 and 11581037 overlap by 33 nucleotides11581037 and 11723429 overlap by 33 nucleotides11723429 and 11438675 are separated by 0 nucleotides11438675 and 11581038 overlap by 28 nucleotides11581038 and 11723430 overlap by 28 nucleotides11723430 and 11438676 are separated by 0 nucleotides11438676 and 11581039 overlap by 33 nucleotides11581039 and 11723431 overlap by 33 nucleotides11723431 and 11438677 are separated by 0 nucleotides11438677 and 11581040 overlap by 28 nucleotides11581040 and 11723432 overlap by 28 nucleotides11723432 and 11438678 are separated by 0 nucleotides11438678 and 11581041 overlap by 33 nucleotides11581041 and 11723433 overlap by 33 nucleotides11723433 and 11438679 are separated by 0 nucleotides11438679 and 11581042 overlap by 28 nucleotides11581042 and 11723434 overlap by 28 nucleotides11723434 and 11438680 are separated by 0 nucleotides11438680 and 11581043 overlap by 33 nucleotides11581043 and 11723435 overlap by 33 nucleotides11723435 and 11438681 are separated by 0 nucleotides11438681 and 11581044 overlap by 28 nucleotides11581044 and 11723436 overlap by 28 nucleotides11723436 and 11438682 are separated by 0 nucleotides11438682 and 11581045 overlap by 33 nucleotides11581045 and 11723437 overlap by 33 nucleotides11723437 and 11438683 are separated by 0 nucleotides11438683 and 11581046 overlap by 28 nucleotides11581046 and 11723438 overlap by 28 nucleotides11723438 and 11438684 are separated by 0 nucleotides11438684 and 11581047 overlap by 33 nucleotides11581047 and 11723439 overlap by 33 nucleotides11723439 and 11438685 are separated by 0 nucleotides11438685 and 11581048 overlap by 28 nucleotides11581048 and 11723440 overlap by 28 nucleotides11723440 and 11438686 are separated by 0 nucleotides11438686 and 11581049 overlap by 33 nucleotides11581049 and 11723441 overlap by 33 nucleotides11723441 and 11438687 are separated by 0 nucleotides11438687 and 11581050 overlap by 28 nucleotides11581050 and 11723442 overlap by 28 nucleotides11723442 and 11438688 are separated by 0 nucleotides11438688 and 11581051 overlap by 33 nucleotides11581051 and 11723443 overlap by 33 nucleotides11723443 and 11438689 are separated by 0 nucleotides11438689 and 11581052 overlap by 29 nucleotides11581052 and 11723444 overlap by 29 nucleotides11723444 and 11438690 are separated by 0 nucleotides11438690 and 11581053 overlap by 32 nucleotides11581053 and 11723445 overlap by 32 nucleotides11723445 and Rru_A0349 overlap by 26 nucleotidesRru_A0349 and 11438691 overlap by 322 nucleotides11438691 and 11581054 overlap by 29 nucleotides11581054 and 11723446 overlap by 29 nucleotides11723446 and 11438692 are separated by 0 nucleotides11438692 and 11581055 overlap by 32 nucleotides11581055 and 11723447 overlap by 32 nucleotides11723447 and 11438693 are separated by 0 nucleotides11438693 and 11581056 overlap by 29 nucleotides11581056 and 11723448 overlap by 29 nucleotides11723448 and Rru_A0350 are separated by 228 nucleotides 11438657 - no description, at 421,675 to 421,702 11438657 11581020 - no description, at 421,675 to 421,702 11581020 11723412 - no description, at 421,675 to 421,702 11723412 11438658 - no description, at 421,703 to 421,735 11438658 11581021 - no description, at 421,703 to 421,735 11581021 11723413 - no description, at 421,703 to 421,735 11723413 11438659 - no description, at 421,736 to 421,763 11438659 11581022 - no description, at 421,736 to 421,763 11581022 11723414 - no description, at 421,736 to 421,763 11723414 11438660 - no description, at 421,764 to 421,796 11438660 11581023 - no description, at 421,764 to 421,796 11581023 11723415 - no description, at 421,764 to 421,796 11723415 11438661 - no description, at 421,797 to 421,824 11438661 11581024 - no description, at 421,797 to 421,824 11581024 11723416 - no description, at 421,797 to 421,824 11723416 11438662 - no description, at 421,825 to 421,857 11438662 11581025 - no description, at 421,825 to 421,857 11581025 11723417 - no description, at 421,825 to 421,857 11723417 11438663 - no description, at 421,858 to 421,885 11438663 11581026 - no description, at 421,858 to 421,885 11581026 11723418 - no description, at 421,858 to 421,885 11723418 11438664 - no description, at 421,886 to 421,918 11438664 11581027 - no description, at 421,886 to 421,918 11581027 11723419 - no description, at 421,886 to 421,918 11723419 11438665 - no description, at 421,919 to 421,946 11438665 11581028 - no description, at 421,919 to 421,946 11581028 11723420 - no description, at 421,919 to 421,946 11723420 11438666 - no description, at 421,947 to 421,979 11438666 11581029 - no description, at 421,947 to 421,979 11581029 11723421 - no description, at 421,947 to 421,979 11723421 11438667 - no description, at 421,980 to 422,007 11438667 11581030 - no description, at 421,980 to 422,007 11581030 11723422 - no description, at 421,980 to 422,007 11723422 11438668 - no description, at 422,008 to 422,040 11438668 11581031 - no description, at 422,008 to 422,040 11581031 11723423 - no description, at 422,008 to 422,040 11723423 11438669 - no description, at 422,041 to 422,068 11438669 11581032 - no description, at 422,041 to 422,068 11581032 11723424 - no description, at 422,041 to 422,068 11723424 11438670 - no description, at 422,069 to 422,103 11438670 11581033 - no description, at 422,069 to 422,103 11581033 11723425 - no description, at 422,069 to 422,103 11723425 11438671 - no description, at 422,104 to 422,131 11438671 11581034 - no description, at 422,104 to 422,131 11581034 11723426 - no description, at 422,104 to 422,131 11723426 11438672 - no description, at 422,132 to 422,164 11438672 11581035 - no description, at 422,132 to 422,164 11581035 11723427 - no description, at 422,132 to 422,164 11723427 11438673 - no description, at 422,165 to 422,192 11438673 11581036 - no description, at 422,165 to 422,192 11581036 11723428 - no description, at 422,165 to 422,192 11723428 11438674 - no description, at 422,193 to 422,225 11438674 11581037 - no description, at 422,193 to 422,225 11581037 11723429 - no description, at 422,193 to 422,225 11723429 11438675 - no description, at 422,226 to 422,253 11438675 11581038 - no description, at 422,226 to 422,253 11581038 11723430 - no description, at 422,226 to 422,253 11723430 11438676 - no description, at 422,254 to 422,286 11438676 11581039 - no description, at 422,254 to 422,286 11581039 11723431 - no description, at 422,254 to 422,286 11723431 11438677 - no description, at 422,287 to 422,314 11438677 11581040 - no description, at 422,287 to 422,314 11581040 11723432 - no description, at 422,287 to 422,314 11723432 11438678 - no description, at 422,315 to 422,347 11438678 11581041 - no description, at 422,315 to 422,347 11581041 11723433 - no description, at 422,315 to 422,347 11723433 11438679 - no description, at 422,348 to 422,375 11438679 11581042 - no description, at 422,348 to 422,375 11581042 11723434 - no description, at 422,348 to 422,375 11723434 11438680 - no description, at 422,376 to 422,408 11438680 11581043 - no description, at 422,376 to 422,408 11581043 11723435 - no description, at 422,376 to 422,408 11723435 11438681 - no description, at 422,409 to 422,436 11438681 11581044 - no description, at 422,409 to 422,436 11581044 11723436 - no description, at 422,409 to 422,436 11723436 11438682 - no description, at 422,437 to 422,469 11438682 11581045 - no description, at 422,437 to 422,469 11581045 11723437 - no description, at 422,437 to 422,469 11723437 11438683 - no description, at 422,470 to 422,497 11438683 11581046 - no description, at 422,470 to 422,497 11581046 11723438 - no description, at 422,470 to 422,497 11723438 11438684 - no description, at 422,498 to 422,530 11438684 11581047 - no description, at 422,498 to 422,530 11581047 11723439 - no description, at 422,498 to 422,530 11723439 11438685 - no description, at 422,531 to 422,558 11438685 11581048 - no description, at 422,531 to 422,558 11581048 11723440 - no description, at 422,531 to 422,558 11723440 11438686 - no description, at 422,559 to 422,591 11438686 11581049 - no description, at 422,559 to 422,591 11581049 11723441 - no description, at 422,559 to 422,591 11723441 11438687 - no description, at 422,592 to 422,619 11438687 11581050 - no description, at 422,592 to 422,619 11581050 11723442 - no description, at 422,592 to 422,619 11723442 11438688 - no description, at 422,620 to 422,652 11438688 11581051 - no description, at 422,620 to 422,652 11581051 11723443 - no description, at 422,620 to 422,652 11723443 11438689 - no description, at 422,653 to 422,681 11438689 11581052 - no description, at 422,653 to 422,681 11581052 11723444 - no description, at 422,653 to 422,681 11723444 11438690 - no description, at 422,682 to 422,713 11438690 11581053 - no description, at 422,682 to 422,713 11581053 11723445 - no description, at 422,682 to 422,713 11723445 Rru_A0349: Rru_A0349 - hypothetical protein (NCBI), at 422,688 to 423,035 _A0349 11438691 - no description, at 422,714 to 422,742 11438691 11581054 - no description, at 422,714 to 422,742 11581054 11723446 - no description, at 422,714 to 422,742 11723446 11438692 - no description, at 422,743 to 422,774 11438692 11581055 - no description, at 422,743 to 422,774 11581055 11723447 - no description, at 422,743 to 422,774 11723447 11438693 - no description, at 422,775 to 422,803 11438693 11581056 - no description, at 422,775 to 422,803 11581056 11723448 - no description, at 422,775 to 422,803 11723448 Rru_A0350: Rru_A0350 - Helix-turn-helix protein, CopG (NCBI), at 423,032 to 423,388 _A0350 Position (kb) 422 423 424Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 421.698 kb on - strandat 421.758 kb on + strandat 421.778 kb on + strandat 421.880 kb on + strandat 421.880 kb on + strandat 421.880 kb on + strandat 421.881 kb on - strandat 421.941 kb on + strandat 421.970 kb on - strandat 422.002 kb on + strandat 422.002 kb on + strandat 422.187 kb on + strandat 422.217 kb on - strandat 422.217 kb on - strandat 422.217 kb on - strandat 422.249 kb on - strandat 422.310 kb on - strandat 422.393 kb on + strandat 422.394 kb on - strandat 422.394 kb on - strandat 422.394 kb on - strandat 422.394 kb on - strandat 422.431 kb on + strandat 422.432 kb on - strandat 422.615 kb on - strandat 422.822 kb on + strandat 422.917 kb on + strandat 422.936 kb on - strandat 422.995 kb on + strandat 422.996 kb on - strandat 423.023 kb on + strandat 423.023 kb on + strandat 423.063 kb on - strandat 423.149 kb on + strand, within Rru_A0350at 423.150 kb on - strand, within Rru_A0350at 423.190 kb on + strand, within Rru_A0350at 423.223 kb on - strand, within Rru_A0350at 423.223 kb on - strand, within Rru_A0350at 423.264 kb on + strand, within Rru_A0350at 423.264 kb on + strand, within Rru_A0350at 423.265 kb on - strand, within Rru_A0350at 423.431 kb on - strandat 423.450 kb on - strandat 423.469 kb on + strandat 423.470 kb on - strandat 423.470 kb on - strandat 423.596 kb on + strandat 423.601 kb on + strandat 423.683 kb on - strandat 423.683 kb on - strandat 423.728 kb on + strandat 423.728 kb on + strandat 423.728 kb on + strandat 423.822 kb on + strandat 423.827 kb on - strandat 423.835 kb on + strandat 423.863 kb on - strandat 423.863 kb on - strandat 423.863 kb on - strandat 423.863 kb on - strandat 423.863 kb on - strandat 423.881 kb on - strandat 423.969 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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421,698 - +0.5
421,758 + -1.6
421,778 + -2.2
421,880 + +2.1
421,880 + -3.4
421,880 + +1.1
421,881 - -1.1
421,941 + -3.8
421,970 - +0.7
422,002 + +0.5
422,002 + +1.4
422,187 + -1.1
422,217 - +0.5
422,217 - -0.5
422,217 - +2.1
422,249 - +2.1
422,310 - +0.7
422,393 + -1.1
422,394 - +1.5
422,394 - +0.1
422,394 - -4.3
422,394 - -0.5
422,431 + -1.1
422,432 - +0.5
422,615 - -0.4
422,822 + +1.7
422,917 + -0.3
422,936 - -2.2
422,995 + -0.9
422,996 - +0.5
423,023 + +0.9
423,023 + -1.9
423,063 - +0.3
423,149 + Rru_A0350 0.33 -0.5
423,150 - Rru_A0350 0.33 +3.6
423,190 + Rru_A0350 0.44 +0.1
423,223 - Rru_A0350 0.54 -0.8
423,223 - Rru_A0350 0.54 +0.5
423,264 + Rru_A0350 0.65 +1.6
423,264 + Rru_A0350 0.65 -1.4
423,265 - Rru_A0350 0.65 +0.8
423,431 - -0.9
423,450 - +2.1
423,469 + +1.1
423,470 - +0.3
423,470 - +1.1
423,596 + -3.2
423,601 + +0.7
423,683 - +0.2
423,683 - +2.1
423,728 + -2.0
423,728 + +0.7
423,728 + -0.8
423,822 + -2.9
423,827 - -0.0
423,835 + +0.2
423,863 - +2.3
423,863 - +0.4
423,863 - -0.2
423,863 - +0.9
423,863 - +2.2
423,881 - -1.4
423,969 - -0.3

Or see this region's nucleotide sequence