Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0344 and Rru_A0345 overlap by 8 nucleotides Rru_A0345 and Rru_A0346 overlap by 4 nucleotides Rru_A0346 and Rru_A0347 are separated by 10 nucleotides Rru_A0347 and Rru_A0348 overlap by 1 nucleotides
Rru_A0344: Rru_A0344 - CRISPR-associated protein, CT1975 (NCBI), at 416,445 to 417,590
_A0344
Rru_A0345: Rru_A0345 - CRISPR-associated protein, CT1976 (NCBI), at 417,583 to 418,332
_A0345
Rru_A0346: Rru_A0346 - CRISPR-associated protein, CT1974 family (NCBI), at 418,329 to 419,060
_A0346
Rru_A0347: Rru_A0347 - Protein of unknown function DUF48 (NCBI), at 419,071 to 419,952
_A0347
Rru_A0348: Rru_A0348 - CRISPR-associated protein, Cas2 (NCBI), at 419,952 to 420,275
_A0348
Position (kb) 418
419
420 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 418.328 kb on + strand at 418.328 kb on + strand at 418.328 kb on + strand at 418.328 kb on + strand at 418.341 kb on + strand at 419.353 kb on + strand, within Rru_A0347 at 419.354 kb on - strand, within Rru_A0347 at 419.355 kb on + strand, within Rru_A0347 at 419.405 kb on + strand, within Rru_A0347 at 419.406 kb on - strand, within Rru_A0347 at 419.406 kb on - strand, within Rru_A0347 at 419.455 kb on + strand, within Rru_A0347 at 419.455 kb on + strand, within Rru_A0347 at 419.455 kb on + strand, within Rru_A0347 at 419.455 kb on + strand, within Rru_A0347 at 419.455 kb on + strand, within Rru_A0347 at 419.455 kb on + strand, within Rru_A0347 at 419.455 kb on + strand, within Rru_A0347 at 419.456 kb on - strand, within Rru_A0347 at 419.456 kb on - strand, within Rru_A0347 at 419.456 kb on - strand, within Rru_A0347 at 419.456 kb on - strand, within Rru_A0347 at 419.539 kb on + strand, within Rru_A0347 at 419.561 kb on - strand, within Rru_A0347 at 419.567 kb on + strand, within Rru_A0347 at 419.567 kb on + strand, within Rru_A0347 at 419.568 kb on - strand, within Rru_A0347 at 419.568 kb on - strand, within Rru_A0347 at 419.587 kb on + strand, within Rru_A0347 at 419.588 kb on - strand, within Rru_A0347 at 419.588 kb on - strand, within Rru_A0347 at 419.588 kb on - strand, within Rru_A0347 at 419.773 kb on - strand, within Rru_A0347 at 419.884 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 418,328 + +2.1 418,328 + +1.5 418,328 + -0.5 418,328 + +1.1 418,341 + -0.3 419,353 + Rru_A0347 0.32 -0.1 419,354 - Rru_A0347 0.32 +0.9 419,355 + Rru_A0347 0.32 +1.1 419,405 + Rru_A0347 0.38 -1.1 419,406 - Rru_A0347 0.38 +1.3 419,406 - Rru_A0347 0.38 -0.3 419,455 + Rru_A0347 0.44 -0.2 419,455 + Rru_A0347 0.44 -3.3 419,455 + Rru_A0347 0.44 -1.9 419,455 + Rru_A0347 0.44 -2.5 419,455 + Rru_A0347 0.44 -0.8 419,455 + Rru_A0347 0.44 +0.1 419,455 + Rru_A0347 0.44 -1.5 419,456 - Rru_A0347 0.44 -1.5 419,456 - Rru_A0347 0.44 -1.9 419,456 - Rru_A0347 0.44 +2.1 419,456 - Rru_A0347 0.44 -0.8 419,539 + Rru_A0347 0.53 -2.6 419,561 - Rru_A0347 0.56 +1.6 419,567 + Rru_A0347 0.56 -0.0 419,567 + Rru_A0347 0.56 +0.1 419,568 - Rru_A0347 0.56 -2.4 419,568 - Rru_A0347 0.56 +0.5 419,587 + Rru_A0347 0.59 -0.9 419,588 - Rru_A0347 0.59 -0.7 419,588 - Rru_A0347 0.59 +2.1 419,588 - Rru_A0347 0.59 +0.9 419,773 - Rru_A0347 0.80 -1.3 419,884 - -2.8
Or see this region's nucleotide sequence