Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0345

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0344 and Rru_A0345 overlap by 8 nucleotidesRru_A0345 and Rru_A0346 overlap by 4 nucleotidesRru_A0346 and Rru_A0347 are separated by 10 nucleotides Rru_A0344: Rru_A0344 - CRISPR-associated protein, CT1975 (NCBI), at 416,445 to 417,590 _A0344 Rru_A0345: Rru_A0345 - CRISPR-associated protein, CT1976 (NCBI), at 417,583 to 418,332 _A0345 Rru_A0346: Rru_A0346 - CRISPR-associated protein, CT1974 family (NCBI), at 418,329 to 419,060 _A0346 Rru_A0347: Rru_A0347 - Protein of unknown function DUF48 (NCBI), at 419,071 to 419,952 _A0347 Position (kb) 417 418 419Strain fitness (log2 ratio) -1 0 1 2at 418.328 kb on + strandat 418.328 kb on + strandat 418.328 kb on + strandat 418.328 kb on + strandat 418.341 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
418,328 + +2.1
418,328 + +1.5
418,328 + -0.5
418,328 + +1.1
418,341 + -0.3

Or see this region's nucleotide sequence