Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0341 and Rru_A0342 overlap by 4 nucleotides Rru_A0342 and Rru_A0343 overlap by 11 nucleotides Rru_A0343 and Rru_A0344 are separated by 12 nucleotides Rru_A0344 and Rru_A0345 overlap by 8 nucleotides Rru_A0345 and Rru_A0346 overlap by 4 nucleotides
Rru_A0341: Rru_A0341 - hypothetical protein (NCBI), at 414,192 to 415,475
_A0341
Rru_A0342: Rru_A0342 - hypothetical protein (NCBI), at 415,472 to 415,879
_A0342
Rru_A0343: Rru_A0343 - hypothetical protein (NCBI), at 415,869 to 416,432
_A0343
Rru_A0344: Rru_A0344 - CRISPR-associated protein, CT1975 (NCBI), at 416,445 to 417,590
_A0344
Rru_A0345: Rru_A0345 - CRISPR-associated protein, CT1976 (NCBI), at 417,583 to 418,332
_A0345
Rru_A0346: Rru_A0346 - CRISPR-associated protein, CT1974 family (NCBI), at 418,329 to 419,060
_A0346
Position (kb) 416
417
418 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 415.896 kb on + strand at 416.413 kb on + strand at 416.414 kb on - strand at 416.430 kb on + strand at 416.430 kb on + strand at 418.328 kb on + strand at 418.328 kb on + strand at 418.328 kb on + strand at 418.328 kb on + strand at 418.341 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 415,896 + -1.5 416,413 + -0.8 416,414 - -2.9 416,430 + +1.6 416,430 + -0.9 418,328 + +2.1 418,328 + +1.5 418,328 + -0.5 418,328 + +1.1 418,341 + -0.3
Or see this region's nucleotide sequence