Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0343

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0341 and Rru_A0342 overlap by 4 nucleotidesRru_A0342 and Rru_A0343 overlap by 11 nucleotidesRru_A0343 and Rru_A0344 are separated by 12 nucleotides Rru_A0341: Rru_A0341 - hypothetical protein (NCBI), at 414,192 to 415,475 _A0341 Rru_A0342: Rru_A0342 - hypothetical protein (NCBI), at 415,472 to 415,879 _A0342 Rru_A0343: Rru_A0343 - hypothetical protein (NCBI), at 415,869 to 416,432 _A0343 Rru_A0344: Rru_A0344 - CRISPR-associated protein, CT1975 (NCBI), at 416,445 to 417,590 _A0344 Position (kb) 415 416 417Strain fitness (log2 ratio) -3 -2 -1 0 1at 415.896 kb on + strandat 416.413 kb on + strandat 416.414 kb on - strandat 416.430 kb on + strandat 416.430 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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415,896 + -1.5
416,413 + -0.8
416,414 - -2.9
416,430 + +1.6
416,430 + -0.9

Or see this region's nucleotide sequence