Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0333 and Rru_A0334 are separated by 475 nucleotides Rru_A0334 and Rru_A0335 are separated by 148 nucleotides Rru_A0335 and Rru_AR0014 are separated by 92 nucleotides
Rru_A0333: Rru_A0333 - Ferritin and Dps (NCBI), at 405,004 to 405,480
_A0333
Rru_A0334: Rru_A0334 - Transcriptional Regulator, LysR family (NCBI), at 405,956 to 406,918
_A0334
Rru_A0335: Rru_A0335 - YbaK/prolyl-tRNA synthetase associated region (NCBI), at 407,067 to 407,606
_A0335
Rru_AR0014: Rru_AR0014 - tRNA-Ser (NCBI), at 407,699 to 407,790
_AR0014
Position (kb) 405
406
407 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 405.019 kb on - strand at 405.019 kb on - strand at 405.222 kb on - strand, within Rru_A0333 at 405.230 kb on + strand, within Rru_A0333 at 405.248 kb on + strand, within Rru_A0333 at 405.305 kb on + strand, within Rru_A0333 at 405.305 kb on + strand, within Rru_A0333 at 405.306 kb on - strand, within Rru_A0333 at 405.306 kb on - strand, within Rru_A0333 at 405.306 kb on - strand, within Rru_A0333 at 405.306 kb on - strand, within Rru_A0333 at 405.306 kb on - strand, within Rru_A0333 at 405.306 kb on - strand, within Rru_A0333 at 405.366 kb on - strand, within Rru_A0333 at 405.384 kb on - strand, within Rru_A0333 at 405.390 kb on + strand, within Rru_A0333 at 405.391 kb on - strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.392 kb on + strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.393 kb on - strand, within Rru_A0333 at 405.608 kb on - strand at 405.609 kb on + strand at 405.879 kb on + strand at 405.879 kb on + strand at 405.880 kb on - strand at 405.936 kb on - strand at 406.280 kb on + strand, within Rru_A0334 at 406.280 kb on + strand, within Rru_A0334 at 406.280 kb on + strand, within Rru_A0334 at 406.280 kb on + strand, within Rru_A0334 at 406.281 kb on - strand, within Rru_A0334 at 406.281 kb on - strand, within Rru_A0334 at 406.281 kb on - strand, within Rru_A0334 at 406.319 kb on + strand, within Rru_A0334 at 406.319 kb on + strand, within Rru_A0334 at 406.320 kb on - strand, within Rru_A0334 at 407.025 kb on + strand at 407.025 kb on + strand at 407.026 kb on - strand at 407.059 kb on + strand at 407.059 kb on + strand at 407.060 kb on - strand at 407.060 kb on - strand at 407.132 kb on + strand, within Rru_A0335 at 407.132 kb on + strand, within Rru_A0335 at 407.132 kb on + strand, within Rru_A0335 at 407.132 kb on + strand, within Rru_A0335 at 407.133 kb on - strand, within Rru_A0335 at 407.180 kb on + strand, within Rru_A0335 at 407.180 kb on + strand, within Rru_A0335 at 407.180 kb on + strand, within Rru_A0335 at 407.604 kb on + strand at 407.608 kb on + strand at 407.888 kb on + strand at 407.908 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 405,019 - +0.0 405,019 - +1.8 405,222 - Rru_A0333 0.46 -2.7 405,230 + Rru_A0333 0.47 -1.1 405,248 + Rru_A0333 0.51 -1.7 405,305 + Rru_A0333 0.63 -0.2 405,305 + Rru_A0333 0.63 -1.2 405,306 - Rru_A0333 0.63 +0.6 405,306 - Rru_A0333 0.63 -1.0 405,306 - Rru_A0333 0.63 -1.4 405,306 - Rru_A0333 0.63 +1.8 405,306 - Rru_A0333 0.63 -1.1 405,306 - Rru_A0333 0.63 +3.7 405,366 - Rru_A0333 0.76 +1.0 405,384 - Rru_A0333 0.80 +1.0 405,390 + Rru_A0333 0.81 -1.1 405,391 - Rru_A0333 0.81 -1.4 405,392 + Rru_A0333 0.81 -0.9 405,392 + Rru_A0333 0.81 -2.7 405,392 + Rru_A0333 0.81 +0.9 405,392 + Rru_A0333 0.81 +0.2 405,392 + Rru_A0333 0.81 -2.7 405,392 + Rru_A0333 0.81 -1.4 405,392 + Rru_A0333 0.81 +4.4 405,392 + Rru_A0333 0.81 -1.1 405,392 + Rru_A0333 0.81 -0.7 405,392 + Rru_A0333 0.81 +0.0 405,392 + Rru_A0333 0.81 +0.3 405,392 + Rru_A0333 0.81 +0.1 405,392 + Rru_A0333 0.81 +0.5 405,392 + Rru_A0333 0.81 -1.8 405,392 + Rru_A0333 0.81 -1.5 405,392 + Rru_A0333 0.81 +0.3 405,392 + Rru_A0333 0.81 -3.0 405,392 + Rru_A0333 0.81 -1.7 405,392 + Rru_A0333 0.81 -0.8 405,393 - Rru_A0333 0.82 -3.0 405,393 - Rru_A0333 0.82 +1.0 405,393 - Rru_A0333 0.82 +0.5 405,393 - Rru_A0333 0.82 -1.2 405,393 - Rru_A0333 0.82 -3.7 405,393 - Rru_A0333 0.82 -0.2 405,393 - Rru_A0333 0.82 +0.3 405,608 - +0.1 405,609 + -3.7 405,879 + -0.7 405,879 + +0.3 405,880 - -2.3 405,936 - +0.0 406,280 + Rru_A0334 0.34 -0.8 406,280 + Rru_A0334 0.34 -1.1 406,280 + Rru_A0334 0.34 -3.1 406,280 + Rru_A0334 0.34 -3.8 406,281 - Rru_A0334 0.34 -1.0 406,281 - Rru_A0334 0.34 -0.7 406,281 - Rru_A0334 0.34 -1.8 406,319 + Rru_A0334 0.38 -1.0 406,319 + Rru_A0334 0.38 -1.9 406,320 - Rru_A0334 0.38 -0.8 407,025 + -2.1 407,025 + +0.1 407,026 - +2.0 407,059 + -0.1 407,059 + -2.9 407,060 - +0.9 407,060 - -2.0 407,132 + Rru_A0335 0.12 +0.3 407,132 + Rru_A0335 0.12 -0.3 407,132 + Rru_A0335 0.12 -3.8 407,132 + Rru_A0335 0.12 +1.5 407,133 - Rru_A0335 0.12 -2.0 407,180 + Rru_A0335 0.21 -1.4 407,180 + Rru_A0335 0.21 -0.4 407,180 + Rru_A0335 0.21 -2.4 407,604 + -3.6 407,608 + -3.1 407,888 + +0.1 407,908 + -2.1
Or see this region's nucleotide sequence