Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0317

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0316 and Rru_A0317 are separated by 2 nucleotidesRru_A0317 and Rru_A0318 are separated by 8 nucleotidesRru_A0318 and Rru_A0319 overlap by 8 nucleotides Rru_A0316: Rru_A0316 - NADH-ubiquinone oxidoreductase (NCBI), at 385,692 to 387,377 _A0316 Rru_A0317: Rru_A0317 - Respiratory-chain NADH dehydrogenase, subunit 1 (NCBI), at 387,380 to 388,282 _A0317 Rru_A0318: Rru_A0318 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 388,291 to 388,818 _A0318 Rru_A0319: Rru_A0319 - NADH-ubiquinone oxidoreductase, chain 4L (NCBI), at 388,811 to 389,476 _A0319 Position (kb) 387 388 389Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 386.430 kb on + strand, within Rru_A0316at 386.430 kb on + strand, within Rru_A0316at 386.431 kb on - strand, within Rru_A0316at 386.484 kb on + strand, within Rru_A0316at 386.485 kb on - strand, within Rru_A0316at 386.485 kb on - strand, within Rru_A0316at 386.556 kb on + strand, within Rru_A0316at 386.556 kb on + strand, within Rru_A0316at 386.557 kb on - strand, within Rru_A0316at 386.557 kb on - strand, within Rru_A0316at 386.557 kb on - strand, within Rru_A0316at 386.557 kb on - strand, within Rru_A0316at 386.649 kb on + strand, within Rru_A0316at 386.649 kb on + strand, within Rru_A0316at 386.650 kb on - strand, within Rru_A0316at 386.650 kb on - strand, within Rru_A0316at 387.088 kb on - strand, within Rru_A0316at 387.126 kb on + strand, within Rru_A0316at 387.126 kb on + strand, within Rru_A0316at 387.126 kb on + strand, within Rru_A0316at 387.126 kb on + strand, within Rru_A0316at 387.127 kb on - strand, within Rru_A0316at 387.127 kb on - strand, within Rru_A0316at 387.183 kb on + strand, within Rru_A0316at 387.184 kb on - strand, within Rru_A0316at 387.327 kb on + strandat 387.327 kb on + strandat 387.327 kb on + strandat 387.375 kb on + strandat 387.509 kb on + strand, within Rru_A0317at 387.509 kb on + strand, within Rru_A0317at 387.510 kb on - strand, within Rru_A0317at 387.680 kb on + strand, within Rru_A0317at 387.680 kb on + strand, within Rru_A0317at 387.680 kb on + strand, within Rru_A0317at 387.680 kb on + strand, within Rru_A0317at 387.680 kb on + strand, within Rru_A0317at 387.681 kb on - strand, within Rru_A0317at 387.681 kb on - strand, within Rru_A0317at 387.681 kb on - strand, within Rru_A0317at 387.681 kb on - strand, within Rru_A0317at 387.681 kb on - strand, within Rru_A0317at 387.681 kb on - strand, within Rru_A0317at 387.715 kb on - strand, within Rru_A0317at 387.741 kb on - strand, within Rru_A0317at 387.741 kb on - strand, within Rru_A0317at 387.741 kb on - strand, within Rru_A0317at 387.746 kb on + strand, within Rru_A0317at 387.746 kb on + strand, within Rru_A0317at 387.777 kb on + strand, within Rru_A0317at 387.778 kb on - strand, within Rru_A0317at 387.867 kb on - strand, within Rru_A0317at 387.867 kb on - strand, within Rru_A0317at 388.166 kb on - strand, within Rru_A0317at 388.352 kb on - strand, within Rru_A0318at 388.832 kb on + strandat 388.907 kb on + strand, within Rru_A0319at 388.908 kb on - strand, within Rru_A0319at 388.908 kb on - strand, within Rru_A0319at 388.980 kb on - strand, within Rru_A0319at 388.983 kb on - strand, within Rru_A0319at 388.983 kb on - strand, within Rru_A0319at 389.042 kb on + strand, within Rru_A0319at 389.042 kb on + strand, within Rru_A0319at 389.043 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319at 389.244 kb on - strand, within Rru_A0319

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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386,430 + Rru_A0316 0.44 -2.3
386,430 + Rru_A0316 0.44 +0.1
386,431 - Rru_A0316 0.44 +0.3
386,484 + Rru_A0316 0.47 -0.8
386,485 - Rru_A0316 0.47 +1.1
386,485 - Rru_A0316 0.47 +5.1
386,556 + Rru_A0316 0.51 +0.1
386,556 + Rru_A0316 0.51 -0.7
386,557 - Rru_A0316 0.51 -1.4
386,557 - Rru_A0316 0.51 -0.6
386,557 - Rru_A0316 0.51 +1.1
386,557 - Rru_A0316 0.51 -0.3
386,649 + Rru_A0316 0.57 +0.1
386,649 + Rru_A0316 0.57 -3.2
386,650 - Rru_A0316 0.57 -1.8
386,650 - Rru_A0316 0.57 -0.3
387,088 - Rru_A0316 0.83 +1.6
387,126 + Rru_A0316 0.85 -1.3
387,126 + Rru_A0316 0.85 -3.6
387,126 + Rru_A0316 0.85 -0.5
387,126 + Rru_A0316 0.85 -2.9
387,127 - Rru_A0316 0.85 +2.2
387,127 - Rru_A0316 0.85 +2.5
387,183 + Rru_A0316 0.88 +2.1
387,184 - Rru_A0316 0.88 +0.1
387,327 + +0.5
387,327 + -0.1
387,327 + -3.5
387,375 + -3.2
387,509 + Rru_A0317 0.14 -1.1
387,509 + Rru_A0317 0.14 -1.3
387,510 - Rru_A0317 0.14 +1.1
387,680 + Rru_A0317 0.33 -2.5
387,680 + Rru_A0317 0.33 -2.6
387,680 + Rru_A0317 0.33 -0.9
387,680 + Rru_A0317 0.33 -0.7
387,680 + Rru_A0317 0.33 -3.0
387,681 - Rru_A0317 0.33 -0.4
387,681 - Rru_A0317 0.33 +0.2
387,681 - Rru_A0317 0.33 -0.3
387,681 - Rru_A0317 0.33 +0.2
387,681 - Rru_A0317 0.33 -0.3
387,681 - Rru_A0317 0.33 +0.8
387,715 - Rru_A0317 0.37 +0.2
387,741 - Rru_A0317 0.40 +0.3
387,741 - Rru_A0317 0.40 -4.3
387,741 - Rru_A0317 0.40 -1.1
387,746 + Rru_A0317 0.41 +0.5
387,746 + Rru_A0317 0.41 +0.1
387,777 + Rru_A0317 0.44 -0.9
387,778 - Rru_A0317 0.44 +1.0
387,867 - Rru_A0317 0.54 -1.2
387,867 - Rru_A0317 0.54 +0.5
388,166 - Rru_A0317 0.87 +1.3
388,352 - Rru_A0318 0.12 +0.5
388,832 + -0.7
388,907 + Rru_A0319 0.14 -2.7
388,908 - Rru_A0319 0.15 -2.1
388,908 - Rru_A0319 0.15 +0.9
388,980 - Rru_A0319 0.25 +0.1
388,983 - Rru_A0319 0.26 -1.4
388,983 - Rru_A0319 0.26 -3.2
389,042 + Rru_A0319 0.35 -0.1
389,042 + Rru_A0319 0.35 +1.1
389,043 - Rru_A0319 0.35 +2.3
389,244 - Rru_A0319 0.65 +1.2
389,244 - Rru_A0319 0.65 -1.1
389,244 - Rru_A0319 0.65 +0.6
389,244 - Rru_A0319 0.65 +1.8
389,244 - Rru_A0319 0.65 -0.8

Or see this region's nucleotide sequence