Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0312

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0311 and Rru_A0312 are separated by 160 nucleotidesRru_A0312 and Rru_A0313 overlap by 1 nucleotides Rru_A0311: Rru_A0311 - Formate/nitrite transporter (NCBI), at 379,347 to 380,279 _A0311 Rru_A0312: Rru_A0312 - 4Fe-4S ferredoxin, iron-sulfur binding (NCBI), at 380,440 to 380,853 _A0312 Rru_A0313: Rru_A0313 - Aldehyde ferredoxin oxidoreductase (NCBI), at 380,853 to 382,136 _A0313 Position (kb) 380 381Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 379.764 kb on + strand, within Rru_A0311at 379.764 kb on + strand, within Rru_A0311at 379.764 kb on + strand, within Rru_A0311at 379.765 kb on - strand, within Rru_A0311at 379.765 kb on - strand, within Rru_A0311at 379.765 kb on - strand, within Rru_A0311at 379.765 kb on - strand, within Rru_A0311at 379.765 kb on - strand, within Rru_A0311at 379.803 kb on + strand, within Rru_A0311at 379.804 kb on - strand, within Rru_A0311at 379.804 kb on - strand, within Rru_A0311at 379.870 kb on - strand, within Rru_A0311at 379.870 kb on - strand, within Rru_A0311at 380.385 kb on - strandat 381.162 kb on + strand, within Rru_A0313at 381.162 kb on + strand, within Rru_A0313at 381.162 kb on + strand, within Rru_A0313at 381.213 kb on + strand, within Rru_A0313at 381.213 kb on + strand, within Rru_A0313at 381.213 kb on + strand, within Rru_A0313at 381.214 kb on - strand, within Rru_A0313at 381.214 kb on - strand, within Rru_A0313at 381.214 kb on - strand, within Rru_A0313

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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379,764 + Rru_A0311 0.45 -0.6
379,764 + Rru_A0311 0.45 +1.1
379,764 + Rru_A0311 0.45 -3.1
379,765 - Rru_A0311 0.45 +3.6
379,765 - Rru_A0311 0.45 -0.8
379,765 - Rru_A0311 0.45 +0.1
379,765 - Rru_A0311 0.45 +1.1
379,765 - Rru_A0311 0.45 -0.1
379,803 + Rru_A0311 0.49 +0.5
379,804 - Rru_A0311 0.49 +0.3
379,804 - Rru_A0311 0.49 +0.8
379,870 - Rru_A0311 0.56 +0.6
379,870 - Rru_A0311 0.56 +0.5
380,385 - -0.1
381,162 + Rru_A0313 0.24 -1.9
381,162 + Rru_A0313 0.24 +0.8
381,162 + Rru_A0313 0.24 +0.5
381,213 + Rru_A0313 0.28 -3.9
381,213 + Rru_A0313 0.28 -0.5
381,213 + Rru_A0313 0.28 +2.1
381,214 - Rru_A0313 0.28 +2.9
381,214 - Rru_A0313 0.28 +0.5
381,214 - Rru_A0313 0.28 +0.5

Or see this region's nucleotide sequence