Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0304

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0303 and Rru_A0304 are separated by 334 nucleotidesRru_A0304 and Rru_A0305 are separated by 50 nucleotides Rru_A0303: Rru_A0303 - hypothetical protein (NCBI), at 370,032 to 371,339 _A0303 Rru_A0304: Rru_A0304 - Transcriptional Regulator, XRE family (NCBI), at 371,674 to 371,964 _A0304 Rru_A0305: Rru_A0305 - Hydrogenase expression/formation protein HypE (NCBI), at 372,015 to 373,040 _A0305 Position (kb) 371 372Strain fitness (log2 ratio) -2 -1 0 1 2 3at 370.799 kb on - strand, within Rru_A0303at 370.879 kb on - strand, within Rru_A0303at 371.375 kb on + strandat 371.439 kb on + strandat 371.491 kb on - strandat 371.491 kb on - strandat 371.492 kb on + strandat 371.493 kb on - strandat 371.493 kb on - strandat 371.493 kb on - strandat 371.493 kb on - strandat 371.561 kb on - strandat 371.731 kb on + strand, within Rru_A0304at 372.522 kb on + strand, within Rru_A0305at 372.523 kb on - strand, within Rru_A0305at 372.523 kb on - strand, within Rru_A0305at 372.523 kb on - strand, within Rru_A0305at 372.570 kb on + strand, within Rru_A0305at 372.741 kb on - strand, within Rru_A0305at 372.741 kb on - strand, within Rru_A0305at 372.757 kb on + strand, within Rru_A0305at 372.757 kb on + strand, within Rru_A0305at 372.757 kb on + strand, within Rru_A0305at 372.758 kb on - strand, within Rru_A0305at 372.758 kb on - strand, within Rru_A0305

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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370,799 - Rru_A0303 0.59 -0.3
370,879 - Rru_A0303 0.65 +2.4
371,375 + +0.7
371,439 + +1.1
371,491 - +2.2
371,491 - +1.5
371,492 + -0.7
371,493 - +1.0
371,493 - +3.0
371,493 - +1.9
371,493 - +2.1
371,561 - +0.2
371,731 + Rru_A0304 0.20 +0.1
372,522 + Rru_A0305 0.49 +1.1
372,523 - Rru_A0305 0.50 +1.9
372,523 - Rru_A0305 0.50 -0.0
372,523 - Rru_A0305 0.50 +0.4
372,570 + Rru_A0305 0.54 +1.4
372,741 - Rru_A0305 0.71 +2.1
372,741 - Rru_A0305 0.71 -2.4
372,757 + Rru_A0305 0.72 -0.3
372,757 + Rru_A0305 0.72 -1.3
372,757 + Rru_A0305 0.72 -2.5
372,758 - Rru_A0305 0.72 -1.8
372,758 - Rru_A0305 0.72 -0.3

Or see this region's nucleotide sequence