Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0298 and Rru_A0299 are separated by 261 nucleotides Rru_A0299 and Rru_A0300 are separated by 32 nucleotides Rru_A0300 and Rru_A0301 are separated by 81 nucleotides
Rru_A0298: Rru_A0298 - Aldehyde dehydrogenase (NAD+) (NCBI), at 364,668 to 366,167
_A0298
Rru_A0299: Rru_A0299 - Glutamine amidotransferase class-I (NCBI), at 366,429 to 367,151
_A0299
Rru_A0300: Rru_A0300 - Aminotransferase, class IV (NCBI), at 367,184 to 368,038
_A0300
Rru_A0301: Rru_A0301 - Alkylhydroperoxidase AhpD core (NCBI), at 368,120 to 368,533
_A0301
Position (kb) 366
367
368 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 365.749 kb on + strand, within Rru_A0298 at 365.749 kb on + strand, within Rru_A0298 at 365.749 kb on + strand, within Rru_A0298 at 365.749 kb on + strand, within Rru_A0298 at 365.750 kb on - strand, within Rru_A0298 at 365.750 kb on - strand, within Rru_A0298 at 365.773 kb on + strand, within Rru_A0298 at 365.774 kb on - strand, within Rru_A0298 at 365.774 kb on - strand, within Rru_A0298 at 366.441 kb on - strand at 366.441 kb on - strand at 366.492 kb on + strand at 366.493 kb on - strand at 366.633 kb on - strand, within Rru_A0299 at 366.951 kb on + strand, within Rru_A0299 at 366.952 kb on - strand, within Rru_A0299 at 367.149 kb on + strand at 367.150 kb on - strand at 367.150 kb on - strand at 367.211 kb on + strand at 367.211 kb on + strand at 367.212 kb on - strand at 367.212 kb on - strand at 367.212 kb on - strand at 367.212 kb on - strand at 367.212 kb on - strand at 367.212 kb on - strand at 367.212 kb on - strand at 367.212 kb on - strand at 367.214 kb on + strand at 367.214 kb on + strand at 367.214 kb on + strand at 367.214 kb on + strand at 367.214 kb on + strand at 367.214 kb on + strand at 367.214 kb on + strand at 367.214 kb on + strand at 367.214 kb on + strand at 367.214 kb on + strand at 367.214 kb on + strand at 367.214 kb on + strand at 367.214 kb on + strand at 367.214 kb on + strand at 367.215 kb on - strand at 367.215 kb on - strand at 367.215 kb on - strand at 367.215 kb on - strand at 367.215 kb on - strand at 367.215 kb on - strand at 367.215 kb on - strand at 367.215 kb on - strand at 367.215 kb on - strand at 367.215 kb on - strand at 367.216 kb on + strand at 367.216 kb on + strand at 367.217 kb on - strand at 367.217 kb on - strand at 367.217 kb on - strand at 367.240 kb on + strand at 367.241 kb on - strand at 367.241 kb on - strand at 367.460 kb on + strand, within Rru_A0300 at 367.460 kb on + strand, within Rru_A0300 at 367.460 kb on + strand, within Rru_A0300 at 367.461 kb on - strand, within Rru_A0300 at 367.461 kb on - strand, within Rru_A0300 at 367.461 kb on - strand, within Rru_A0300 at 367.461 kb on - strand, within Rru_A0300 at 367.463 kb on - strand, within Rru_A0300 at 367.463 kb on - strand, within Rru_A0300 at 367.475 kb on + strand, within Rru_A0300 at 367.475 kb on + strand, within Rru_A0300 at 367.476 kb on - strand, within Rru_A0300 at 367.476 kb on - strand, within Rru_A0300 at 367.476 kb on - strand, within Rru_A0300 at 367.476 kb on - strand, within Rru_A0300 at 367.661 kb on - strand, within Rru_A0300 at 367.933 kb on + strand, within Rru_A0300 at 368.015 kb on + strand at 368.016 kb on - strand at 368.037 kb on - strand at 368.057 kb on + strand at 368.058 kb on - strand at 368.087 kb on + strand at 368.087 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 365,749 + Rru_A0298 0.72 -1.0 365,749 + Rru_A0298 0.72 -2.9 365,749 + Rru_A0298 0.72 +0.1 365,749 + Rru_A0298 0.72 +0.6 365,750 - Rru_A0298 0.72 +0.2 365,750 - Rru_A0298 0.72 +1.1 365,773 + Rru_A0298 0.74 -0.5 365,774 - Rru_A0298 0.74 +1.8 365,774 - Rru_A0298 0.74 -0.9 366,441 - +0.1 366,441 - -2.8 366,492 + +1.1 366,493 - -1.5 366,633 - Rru_A0299 0.28 -1.5 366,951 + Rru_A0299 0.72 -1.3 366,952 - Rru_A0299 0.72 +0.5 367,149 + -0.9 367,150 - +2.1 367,150 - +2.1 367,211 + +1.0 367,211 + -0.8 367,212 - -0.9 367,212 - -0.5 367,212 - -1.6 367,212 - +0.7 367,212 - -0.7 367,212 - -2.9 367,212 - -1.4 367,212 - +1.4 367,214 + +2.6 367,214 + +1.8 367,214 + +1.4 367,214 + +2.4 367,214 + +1.7 367,214 + -1.3 367,214 + +1.0 367,214 + +0.4 367,214 + +2.1 367,214 + -1.6 367,214 + +0.7 367,214 + +2.1 367,214 + -3.4 367,214 + +3.8 367,215 - -1.5 367,215 - -1.4 367,215 - -0.3 367,215 - -2.0 367,215 - +2.1 367,215 - -1.3 367,215 - -1.5 367,215 - -0.1 367,215 - -1.3 367,215 - -0.0 367,216 + +1.1 367,216 + -0.5 367,217 - +2.2 367,217 - +0.3 367,217 - -1.9 367,240 + -0.7 367,241 - +1.3 367,241 - -1.1 367,460 + Rru_A0300 0.32 +1.0 367,460 + Rru_A0300 0.32 -1.9 367,460 + Rru_A0300 0.32 +1.9 367,461 - Rru_A0300 0.32 +1.1 367,461 - Rru_A0300 0.32 -0.5 367,461 - Rru_A0300 0.32 +1.6 367,461 - Rru_A0300 0.32 +2.1 367,463 - Rru_A0300 0.33 -1.5 367,463 - Rru_A0300 0.33 -0.6 367,475 + Rru_A0300 0.34 -2.7 367,475 + Rru_A0300 0.34 +1.7 367,476 - Rru_A0300 0.34 -2.2 367,476 - Rru_A0300 0.34 -2.1 367,476 - Rru_A0300 0.34 -0.3 367,476 - Rru_A0300 0.34 -0.2 367,661 - Rru_A0300 0.56 +0.9 367,933 + Rru_A0300 0.88 +1.7 368,015 + +0.7 368,016 - +0.8 368,037 - -1.2 368,057 + -1.6 368,058 - -0.4 368,087 + +0.5 368,087 + -0.5
Or see this region's nucleotide sequence