Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0296 and Rru_AR0012 are separated by 224 nucleotides Rru_AR0012 and Rru_AR0013 are separated by 202 nucleotides Rru_AR0013 and Rru_A0297 are separated by 43 nucleotides Rru_A0297 and Rru_A0298 are separated by 136 nucleotides
Rru_A0296: Rru_A0296 - hypothetical protein (NCBI), at 362,552 to 362,881
_A0296
Rru_AR0012: Rru_AR0012 - tRNA-Ala (NCBI), at 363,106 to 363,181
_AR0012
Rru_AR0013: Rru_AR0013 - tRNA-Ala (NCBI), at 363,384 to 363,459
_AR0013
Rru_A0297: Rru_A0297 - Putative esterase (NCBI), at 363,503 to 364,531
_A0297
Rru_A0298: Rru_A0298 - Aldehyde dehydrogenase (NAD+) (NCBI), at 364,668 to 366,167
_A0298
Position (kb) 363
364
365 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 362.544 kb on + strand at 362.544 kb on + strand at 362.545 kb on - strand at 362.609 kb on + strand, within Rru_A0296 at 362.610 kb on - strand, within Rru_A0296 at 362.788 kb on + strand, within Rru_A0296 at 362.788 kb on + strand, within Rru_A0296 at 362.880 kb on - strand at 362.880 kb on - strand at 362.880 kb on - strand at 362.974 kb on - strand at 363.291 kb on + strand at 363.392 kb on - strand, within Rru_AR0013 at 363.392 kb on - strand, within Rru_AR0013 at 363.504 kb on + strand at 363.708 kb on + strand, within Rru_A0297 at 363.708 kb on + strand, within Rru_A0297 at 363.709 kb on - strand, within Rru_A0297 at 363.763 kb on + strand, within Rru_A0297 at 363.763 kb on + strand, within Rru_A0297 at 363.763 kb on + strand, within Rru_A0297 at 363.764 kb on - strand, within Rru_A0297 at 363.764 kb on - strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.765 kb on + strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.766 kb on - strand, within Rru_A0297 at 363.894 kb on - strand, within Rru_A0297 at 363.898 kb on + strand, within Rru_A0297 at 363.898 kb on + strand, within Rru_A0297 at 363.899 kb on - strand, within Rru_A0297 at 363.899 kb on - strand, within Rru_A0297 at 363.939 kb on + strand, within Rru_A0297 at 363.940 kb on - strand, within Rru_A0297 at 364.041 kb on + strand, within Rru_A0297 at 364.042 kb on - strand, within Rru_A0297 at 364.042 kb on - strand, within Rru_A0297 at 364.042 kb on - strand, within Rru_A0297 at 364.138 kb on - strand, within Rru_A0297 at 364.221 kb on + strand, within Rru_A0297 at 364.221 kb on + strand, within Rru_A0297 at 364.222 kb on - strand, within Rru_A0297 at 364.359 kb on + strand, within Rru_A0297 at 364.359 kb on + strand, within Rru_A0297 at 364.359 kb on + strand, within Rru_A0297 at 364.360 kb on - strand, within Rru_A0297 at 364.360 kb on - strand, within Rru_A0297 at 364.360 kb on - strand, within Rru_A0297 at 364.404 kb on + strand, within Rru_A0297 at 364.404 kb on + strand, within Rru_A0297 at 364.404 kb on + strand, within Rru_A0297 at 364.404 kb on + strand, within Rru_A0297 at 364.404 kb on + strand, within Rru_A0297 at 364.405 kb on - strand, within Rru_A0297 at 364.405 kb on - strand, within Rru_A0297 at 364.405 kb on - strand, within Rru_A0297 at 364.405 kb on - strand, within Rru_A0297 at 364.405 kb on - strand, within Rru_A0297 at 364.592 kb on + strand at 364.670 kb on - strand at 364.703 kb on + strand at 364.703 kb on + strand at 364.704 kb on - strand at 364.704 kb on - strand at 364.705 kb on + strand at 364.705 kb on + strand at 364.705 kb on + strand at 364.705 kb on + strand at 364.705 kb on + strand at 364.771 kb on - strand at 364.778 kb on + strand at 364.793 kb on - strand at 364.804 kb on + strand at 364.804 kb on + strand at 364.805 kb on - strand at 364.805 kb on - strand at 364.866 kb on + strand, within Rru_A0298 at 364.886 kb on - strand, within Rru_A0298 at 365.020 kb on + strand, within Rru_A0298 at 365.020 kb on + strand, within Rru_A0298 at 365.021 kb on - strand, within Rru_A0298 at 365.021 kb on - strand, within Rru_A0298 at 365.096 kb on + strand, within Rru_A0298 at 365.098 kb on + strand, within Rru_A0298 at 365.098 kb on + strand, within Rru_A0298 at 365.276 kb on + strand, within Rru_A0298 at 365.277 kb on - strand, within Rru_A0298 at 365.401 kb on + strand, within Rru_A0298 at 365.402 kb on - strand, within Rru_A0298 at 365.402 kb on - strand, within Rru_A0298
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 362,544 + -2.4 362,544 + -1.1 362,545 - +2.1 362,609 + Rru_A0296 0.17 -0.3 362,610 - Rru_A0296 0.18 -1.3 362,788 + Rru_A0296 0.72 +0.5 362,788 + Rru_A0296 0.72 -1.3 362,880 - +1.4 362,880 - +1.1 362,880 - -1.9 362,974 - +0.1 363,291 + -1.5 363,392 - Rru_AR0013 0.11 -2.3 363,392 - Rru_AR0013 0.11 -1.0 363,504 + -0.9 363,708 + Rru_A0297 0.20 -0.0 363,708 + Rru_A0297 0.20 -1.5 363,709 - Rru_A0297 0.20 -1.7 363,763 + Rru_A0297 0.25 -2.9 363,763 + Rru_A0297 0.25 -1.5 363,763 + Rru_A0297 0.25 -1.1 363,764 - Rru_A0297 0.25 -1.4 363,764 - Rru_A0297 0.25 +1.4 363,765 + Rru_A0297 0.25 -2.4 363,765 + Rru_A0297 0.25 +1.7 363,765 + Rru_A0297 0.25 -3.0 363,765 + Rru_A0297 0.25 -2.3 363,765 + Rru_A0297 0.25 +1.2 363,765 + Rru_A0297 0.25 -1.4 363,765 + Rru_A0297 0.25 +1.1 363,765 + Rru_A0297 0.25 +1.1 363,766 - Rru_A0297 0.26 -3.0 363,766 - Rru_A0297 0.26 -1.3 363,766 - Rru_A0297 0.26 -0.1 363,766 - Rru_A0297 0.26 -1.5 363,766 - Rru_A0297 0.26 +0.1 363,766 - Rru_A0297 0.26 -0.9 363,766 - Rru_A0297 0.26 -0.3 363,766 - Rru_A0297 0.26 -0.5 363,766 - Rru_A0297 0.26 -2.4 363,766 - Rru_A0297 0.26 +0.6 363,894 - Rru_A0297 0.38 -2.3 363,898 + Rru_A0297 0.38 +1.7 363,898 + Rru_A0297 0.38 -1.3 363,899 - Rru_A0297 0.38 -1.6 363,899 - Rru_A0297 0.38 +0.7 363,939 + Rru_A0297 0.42 -0.4 363,940 - Rru_A0297 0.42 -0.6 364,041 + Rru_A0297 0.52 +1.2 364,042 - Rru_A0297 0.52 -0.4 364,042 - Rru_A0297 0.52 +0.3 364,042 - Rru_A0297 0.52 -1.5 364,138 - Rru_A0297 0.62 +0.8 364,221 + Rru_A0297 0.70 +0.5 364,221 + Rru_A0297 0.70 +0.1 364,222 - Rru_A0297 0.70 -1.6 364,359 + Rru_A0297 0.83 -0.7 364,359 + Rru_A0297 0.83 -3.3 364,359 + Rru_A0297 0.83 -1.9 364,360 - Rru_A0297 0.83 +1.0 364,360 - Rru_A0297 0.83 -2.9 364,360 - Rru_A0297 0.83 -1.6 364,404 + Rru_A0297 0.88 -2.1 364,404 + Rru_A0297 0.88 -0.5 364,404 + Rru_A0297 0.88 +0.6 364,404 + Rru_A0297 0.88 -1.3 364,404 + Rru_A0297 0.88 -1.1 364,405 - Rru_A0297 0.88 -3.3 364,405 - Rru_A0297 0.88 -1.8 364,405 - Rru_A0297 0.88 +1.4 364,405 - Rru_A0297 0.88 -2.2 364,405 - Rru_A0297 0.88 +2.1 364,592 + +1.1 364,670 - +1.5 364,703 + +0.8 364,703 + +1.0 364,704 - +0.3 364,704 - -1.5 364,705 + +2.1 364,705 + +2.5 364,705 + +0.9 364,705 + -0.7 364,705 + -1.1 364,771 - +2.7 364,778 + +0.1 364,793 - +1.4 364,804 + +0.5 364,804 + -0.5 364,805 - +0.6 364,805 - +0.5 364,866 + Rru_A0298 0.13 -1.3 364,886 - Rru_A0298 0.15 -0.5 365,020 + Rru_A0298 0.23 -0.4 365,020 + Rru_A0298 0.23 -0.9 365,021 - Rru_A0298 0.24 -0.7 365,021 - Rru_A0298 0.24 +0.7 365,096 + Rru_A0298 0.29 -1.5 365,098 + Rru_A0298 0.29 +2.2 365,098 + Rru_A0298 0.29 -2.6 365,276 + Rru_A0298 0.41 +1.0 365,277 - Rru_A0298 0.41 +2.3 365,401 + Rru_A0298 0.49 -1.1 365,402 - Rru_A0298 0.49 +0.4 365,402 - Rru_A0298 0.49 +1.9
Or see this region's nucleotide sequence