Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0262 and Rru_A0263 are separated by 624 nucleotides Rru_A0263 and Rru_A0264 are separated by 85 nucleotides
Rru_A0262: Rru_A0262 - chemotaxis sensory transducer (NCBI), at 324,273 to 325,601
_A0262
Rru_A0263: Rru_A0263 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (NCBI), at 326,226 to 327,140
_A0263
Rru_A0264: Rru_A0264 - TPR repeat (NCBI), at 327,226 to 329,025
_A0264
Position (kb) 326
327
328 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 325.282 kb on + strand, within Rru_A0262 at 325.283 kb on - strand, within Rru_A0262 at 325.294 kb on + strand, within Rru_A0262 at 325.295 kb on - strand, within Rru_A0262 at 325.295 kb on - strand, within Rru_A0262 at 325.295 kb on - strand, within Rru_A0262 at 325.484 kb on - strand at 325.539 kb on + strand at 325.540 kb on - strand at 325.597 kb on + strand at 325.597 kb on + strand at 325.597 kb on + strand at 325.597 kb on + strand at 325.597 kb on + strand at 325.597 kb on + strand at 325.597 kb on + strand at 325.598 kb on - strand at 325.598 kb on - strand at 325.598 kb on - strand at 325.598 kb on - strand at 325.640 kb on + strand at 325.640 kb on + strand at 325.641 kb on - strand at 325.918 kb on + strand at 327.174 kb on + strand at 327.381 kb on - strand at 327.381 kb on - strand at 327.414 kb on - strand, within Rru_A0264 at 327.414 kb on - strand, within Rru_A0264 at 327.414 kb on - strand, within Rru_A0264 at 327.543 kb on - strand, within Rru_A0264 at 327.543 kb on - strand, within Rru_A0264 at 327.543 kb on - strand, within Rru_A0264 at 327.543 kb on - strand, within Rru_A0264 at 327.543 kb on - strand, within Rru_A0264 at 327.543 kb on - strand, within Rru_A0264 at 327.627 kb on - strand, within Rru_A0264 at 327.635 kb on + strand, within Rru_A0264 at 327.635 kb on + strand, within Rru_A0264 at 327.635 kb on + strand, within Rru_A0264 at 327.636 kb on - strand, within Rru_A0264 at 327.723 kb on - strand, within Rru_A0264 at 327.723 kb on - strand, within Rru_A0264 at 327.744 kb on - strand, within Rru_A0264 at 328.058 kb on - strand, within Rru_A0264 at 328.124 kb on - strand, within Rru_A0264
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 325,282 + Rru_A0262 0.76 +0.1 325,283 - Rru_A0262 0.76 -1.6 325,294 + Rru_A0262 0.77 -0.1 325,295 - Rru_A0262 0.77 +1.1 325,295 - Rru_A0262 0.77 -1.2 325,295 - Rru_A0262 0.77 -1.1 325,484 - -2.3 325,539 + -0.9 325,540 - +1.1 325,597 + -0.3 325,597 + -0.8 325,597 + -2.3 325,597 + -1.4 325,597 + -2.0 325,597 + +2.0 325,597 + +1.5 325,598 - +0.5 325,598 - -1.6 325,598 - -1.3 325,598 - +0.1 325,640 + -1.9 325,640 + +1.0 325,641 - +0.5 325,918 + -3.0 327,174 + +0.5 327,381 - -1.9 327,381 - -0.5 327,414 - Rru_A0264 0.10 +0.4 327,414 - Rru_A0264 0.10 +0.5 327,414 - Rru_A0264 0.10 -3.2 327,543 - Rru_A0264 0.18 +0.2 327,543 - Rru_A0264 0.18 +0.5 327,543 - Rru_A0264 0.18 +0.6 327,543 - Rru_A0264 0.18 +2.1 327,543 - Rru_A0264 0.18 -2.0 327,543 - Rru_A0264 0.18 -1.7 327,627 - Rru_A0264 0.22 -0.7 327,635 + Rru_A0264 0.23 +3.1 327,635 + Rru_A0264 0.23 +0.3 327,635 + Rru_A0264 0.23 +0.5 327,636 - Rru_A0264 0.23 -2.6 327,723 - Rru_A0264 0.28 +1.1 327,723 - Rru_A0264 0.28 -2.3 327,744 - Rru_A0264 0.29 -2.5 328,058 - Rru_A0264 0.46 +1.1 328,124 - Rru_A0264 0.50 -0.3
Or see this region's nucleotide sequence