Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0229 and Rru_A0230 are separated by 105 nucleotides Rru_A0230 and Rru_A0231 are separated by 15 nucleotides Rru_A0231 and Rru_A0232 are separated by 126 nucleotides
Rru_A0229: Rru_A0229 - Glycosyl transferase, group 1 (NCBI), at 281,044 to 282,474
_A0229
Rru_A0230: Rru_A0230 - Asparagine synthase, glutamine-hydrolyzing (NCBI), at 282,580 to 284,556
_A0230
Rru_A0231: Rru_A0231 - hypothetical protein (NCBI), at 284,572 to 285,180
_A0231
Rru_A0232: Rru_A0232 - hypothetical protein (NCBI), at 285,307 to 288,021
_A0232
Position (kb) 282
283
284
285 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 281.885 kb on + strand, within Rru_A0229 at 281.885 kb on + strand, within Rru_A0229 at 281.886 kb on - strand, within Rru_A0229 at 281.886 kb on - strand, within Rru_A0229 at 281.886 kb on - strand, within Rru_A0229 at 281.886 kb on - strand, within Rru_A0229 at 282.201 kb on - strand, within Rru_A0229 at 282.274 kb on + strand, within Rru_A0229 at 282.274 kb on + strand, within Rru_A0229 at 282.275 kb on - strand, within Rru_A0229 at 282.284 kb on + strand, within Rru_A0229 at 282.285 kb on - strand, within Rru_A0229 at 282.307 kb on - strand, within Rru_A0229 at 282.346 kb on + strand at 282.347 kb on - strand at 282.347 kb on - strand at 282.347 kb on - strand at 282.439 kb on + strand at 283.966 kb on + strand, within Rru_A0230 at 284.573 kb on + strand at 284.574 kb on - strand at 284.675 kb on + strand, within Rru_A0231 at 284.675 kb on + strand, within Rru_A0231 at 284.676 kb on - strand, within Rru_A0231 at 284.676 kb on - strand, within Rru_A0231 at 284.676 kb on - strand, within Rru_A0231 at 284.856 kb on - strand, within Rru_A0231 at 284.903 kb on + strand, within Rru_A0231 at 284.903 kb on + strand, within Rru_A0231 at 284.903 kb on + strand, within Rru_A0231 at 284.903 kb on + strand, within Rru_A0231 at 284.903 kb on + strand, within Rru_A0231 at 284.904 kb on - strand, within Rru_A0231 at 284.904 kb on - strand, within Rru_A0231 at 284.904 kb on - strand, within Rru_A0231 at 284.928 kb on - strand, within Rru_A0231 at 284.964 kb on - strand, within Rru_A0231 at 284.964 kb on - strand, within Rru_A0231 at 284.984 kb on + strand, within Rru_A0231 at 284.985 kb on - strand, within Rru_A0231 at 284.985 kb on - strand, within Rru_A0231 at 284.985 kb on - strand, within Rru_A0231 at 285.161 kb on - strand at 285.311 kb on + strand at 285.312 kb on - strand at 285.312 kb on - strand at 285.312 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 281,885 + Rru_A0229 0.59 +0.7 281,885 + Rru_A0229 0.59 +0.4 281,886 - Rru_A0229 0.59 -0.8 281,886 - Rru_A0229 0.59 +2.0 281,886 - Rru_A0229 0.59 +0.2 281,886 - Rru_A0229 0.59 +0.5 282,201 - Rru_A0229 0.81 -0.3 282,274 + Rru_A0229 0.86 -2.6 282,274 + Rru_A0229 0.86 +1.2 282,275 - Rru_A0229 0.86 -0.7 282,284 + Rru_A0229 0.87 +1.0 282,285 - Rru_A0229 0.87 +0.4 282,307 - Rru_A0229 0.88 +1.0 282,346 + -1.7 282,347 - -1.0 282,347 - -2.3 282,347 - +0.7 282,439 + +2.0 283,966 + Rru_A0230 0.70 +0.4 284,573 + -0.5 284,574 - +3.8 284,675 + Rru_A0231 0.17 -2.7 284,675 + Rru_A0231 0.17 -2.3 284,676 - Rru_A0231 0.17 +0.4 284,676 - Rru_A0231 0.17 +0.9 284,676 - Rru_A0231 0.17 -1.8 284,856 - Rru_A0231 0.47 +0.6 284,903 + Rru_A0231 0.54 +0.9 284,903 + Rru_A0231 0.54 -0.7 284,903 + Rru_A0231 0.54 -0.6 284,903 + Rru_A0231 0.54 +1.1 284,903 + Rru_A0231 0.54 -1.9 284,904 - Rru_A0231 0.55 +1.0 284,904 - Rru_A0231 0.55 -1.6 284,904 - Rru_A0231 0.55 +1.0 284,928 - Rru_A0231 0.58 +2.0 284,964 - Rru_A0231 0.64 -2.9 284,964 - Rru_A0231 0.64 -2.8 284,984 + Rru_A0231 0.68 +3.2 284,985 - Rru_A0231 0.68 -3.3 284,985 - Rru_A0231 0.68 +1.0 284,985 - Rru_A0231 0.68 -0.1 285,161 - -1.6 285,311 + +2.0 285,312 - -1.2 285,312 - -3.0 285,312 - -1.0
Or see this region's nucleotide sequence