Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0222

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0221 and Rru_A0222 are separated by 94 nucleotidesRru_A0222 and Rru_A0223 are separated by 446 nucleotides Rru_A0221: Rru_A0221 - Phosphoglycerate kinase (NCBI), at 272,257 to 273,450 _A0221 Rru_A0222: Rru_A0222 - Glyceraldehyde-3-phosphate dehydrogenase, type I (NCBI), at 273,545 to 274,552 _A0222 Rru_A0223: Rru_A0223 - Protein of unknown function DUF344 (NCBI), at 274,999 to 276,603 _A0223 Position (kb) 273 274 275Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 273.522 kb on + strandat 273.522 kb on + strandat 273.546 kb on + strandat 273.547 kb on - strandat 274.567 kb on - strandat 274.949 kb on + strandat 274.949 kb on + strandat 274.949 kb on + strandat 274.949 kb on + strandat 274.949 kb on + strandat 274.950 kb on - strandat 274.950 kb on - strandat 274.950 kb on - strandat 274.950 kb on - strandat 274.993 kb on - strandat 274.993 kb on - strandat 275.145 kb on + strandat 275.145 kb on + strandat 275.145 kb on + strandat 275.218 kb on + strand, within Rru_A0223at 275.219 kb on - strand, within Rru_A0223at 275.439 kb on + strand, within Rru_A0223at 275.440 kb on - strand, within Rru_A0223at 275.485 kb on - strand, within Rru_A0223

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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273,522 + -4.0
273,522 + -2.2
273,546 + -2.1
273,547 - -0.3
274,567 - +0.4
274,949 + -2.0
274,949 + -0.6
274,949 + +0.5
274,949 + +0.1
274,949 + -0.7
274,950 - +2.6
274,950 - +1.6
274,950 - +0.5
274,950 - +0.6
274,993 - -0.5
274,993 - -0.3
275,145 + -0.3
275,145 + +0.7
275,145 + -0.3
275,218 + Rru_A0223 0.14 +2.0
275,219 - Rru_A0223 0.14 +1.1
275,439 + Rru_A0223 0.27 +0.3
275,440 - Rru_A0223 0.27 -2.2
275,485 - Rru_A0223 0.30 +1.1

Or see this region's nucleotide sequence