Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0218

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0217 and Rru_A0218 are separated by 218 nucleotidesRru_A0218 and Rru_A0219 are separated by 234 nucleotidesRru_A0219 and Rru_A0220 are separated by 65 nucleotides Rru_A0217: Rru_A0217 - Citrate lyase (NCBI), at 268,873 to 269,850 _A0217 Rru_A0218: Rru_A0218 - Acetyl-CoA carboxylase (NCBI), at 270,069 to 271,034 _A0218 Rru_A0219: Rru_A0219 - hypothetical protein (NCBI), at 271,269 to 271,517 _A0219 Rru_A0220: Rru_A0220 - hypothetical protein (NCBI), at 271,583 to 272,059 _A0220 Position (kb) 270 271 272Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 269.122 kb on + strand, within Rru_A0217at 269.122 kb on + strand, within Rru_A0217at 269.122 kb on + strand, within Rru_A0217at 269.122 kb on + strand, within Rru_A0217at 269.122 kb on + strand, within Rru_A0217at 269.122 kb on + strand, within Rru_A0217at 269.122 kb on + strand, within Rru_A0217at 269.122 kb on + strand, within Rru_A0217at 269.123 kb on - strand, within Rru_A0217at 269.123 kb on - strand, within Rru_A0217at 269.123 kb on - strand, within Rru_A0217at 269.123 kb on - strand, within Rru_A0217at 269.123 kb on - strand, within Rru_A0217at 269.123 kb on - strand, within Rru_A0217at 269.123 kb on - strand, within Rru_A0217at 269.123 kb on - strand, within Rru_A0217at 269.128 kb on + strand, within Rru_A0217at 269.128 kb on + strand, within Rru_A0217at 269.129 kb on - strand, within Rru_A0217at 269.129 kb on - strand, within Rru_A0217at 269.215 kb on + strand, within Rru_A0217at 269.215 kb on + strand, within Rru_A0217at 269.215 kb on + strand, within Rru_A0217at 269.215 kb on + strand, within Rru_A0217at 269.215 kb on + strand, within Rru_A0217at 269.215 kb on + strand, within Rru_A0217at 269.216 kb on - strand, within Rru_A0217at 269.226 kb on + strand, within Rru_A0217at 269.226 kb on + strand, within Rru_A0217at 269.226 kb on + strand, within Rru_A0217at 269.226 kb on + strand, within Rru_A0217at 269.226 kb on + strand, within Rru_A0217at 269.227 kb on - strand, within Rru_A0217at 269.227 kb on - strand, within Rru_A0217at 269.227 kb on - strand, within Rru_A0217at 269.227 kb on - strand, within Rru_A0217at 269.377 kb on + strand, within Rru_A0217at 269.431 kb on + strand, within Rru_A0217at 269.431 kb on + strand, within Rru_A0217at 269.473 kb on + strand, within Rru_A0217at 269.473 kb on + strand, within Rru_A0217at 269.474 kb on - strand, within Rru_A0217at 269.497 kb on + strand, within Rru_A0217at 269.497 kb on + strand, within Rru_A0217at 269.848 kb on + strandat 269.923 kb on + strandat 271.033 kb on - strandat 271.033 kb on - strandat 271.135 kb on - strandat 271.135 kb on - strandat 271.137 kb on - strandat 271.137 kb on - strandat 271.236 kb on + strandat 271.236 kb on + strandat 271.236 kb on + strandat 271.237 kb on - strandat 271.237 kb on - strandat 271.295 kb on + strand, within Rru_A0219at 271.295 kb on + strand, within Rru_A0219at 271.296 kb on - strand, within Rru_A0219at 271.296 kb on - strand, within Rru_A0219at 271.301 kb on + strand, within Rru_A0219at 271.302 kb on - strand, within Rru_A0219at 271.383 kb on + strand, within Rru_A0219at 271.383 kb on + strand, within Rru_A0219at 271.434 kb on + strand, within Rru_A0219at 271.434 kb on + strand, within Rru_A0219at 271.434 kb on + strand, within Rru_A0219at 271.435 kb on - strand, within Rru_A0219at 271.435 kb on - strand, within Rru_A0219at 271.435 kb on - strand, within Rru_A0219at 271.438 kb on - strand, within Rru_A0219at 271.438 kb on - strand, within Rru_A0219at 271.515 kb on + strandat 271.515 kb on + strandat 271.516 kb on - strandat 271.516 kb on - strandat 271.516 kb on - strandat 271.516 kb on - strandat 271.516 kb on - strandat 271.831 kb on - strand, within Rru_A0220at 271.983 kb on + strand, within Rru_A0220at 271.983 kb on + strand, within Rru_A0220

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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269,122 + Rru_A0217 0.25 +1.0
269,122 + Rru_A0217 0.25 -0.6
269,122 + Rru_A0217 0.25 +0.6
269,122 + Rru_A0217 0.25 -0.3
269,122 + Rru_A0217 0.25 -2.4
269,122 + Rru_A0217 0.25 +2.0
269,122 + Rru_A0217 0.25 -0.6
269,122 + Rru_A0217 0.25 -2.7
269,123 - Rru_A0217 0.26 -0.5
269,123 - Rru_A0217 0.26 +0.1
269,123 - Rru_A0217 0.26 +0.4
269,123 - Rru_A0217 0.26 -0.3
269,123 - Rru_A0217 0.26 +0.6
269,123 - Rru_A0217 0.26 +1.7
269,123 - Rru_A0217 0.26 +1.1
269,123 - Rru_A0217 0.26 +0.3
269,128 + Rru_A0217 0.26 +0.8
269,128 + Rru_A0217 0.26 +2.0
269,129 - Rru_A0217 0.26 -0.8
269,129 - Rru_A0217 0.26 -3.0
269,215 + Rru_A0217 0.35 -0.3
269,215 + Rru_A0217 0.35 +1.1
269,215 + Rru_A0217 0.35 -0.8
269,215 + Rru_A0217 0.35 -0.6
269,215 + Rru_A0217 0.35 -3.2
269,215 + Rru_A0217 0.35 -2.7
269,216 - Rru_A0217 0.35 -1.4
269,226 + Rru_A0217 0.36 -1.4
269,226 + Rru_A0217 0.36 -2.3
269,226 + Rru_A0217 0.36 +1.0
269,226 + Rru_A0217 0.36 -2.2
269,226 + Rru_A0217 0.36 -0.3
269,227 - Rru_A0217 0.36 -1.4
269,227 - Rru_A0217 0.36 +0.1
269,227 - Rru_A0217 0.36 -0.2
269,227 - Rru_A0217 0.36 -1.3
269,377 + Rru_A0217 0.52 +0.7
269,431 + Rru_A0217 0.57 +0.6
269,431 + Rru_A0217 0.57 -2.1
269,473 + Rru_A0217 0.61 -2.3
269,473 + Rru_A0217 0.61 +1.0
269,474 - Rru_A0217 0.61 +0.7
269,497 + Rru_A0217 0.64 -1.0
269,497 + Rru_A0217 0.64 +0.0
269,848 + +0.0
269,923 + -1.7
271,033 - +1.9
271,033 - +1.3
271,135 - +2.0
271,135 - +0.5
271,137 - -0.4
271,137 - +2.2
271,236 + -1.0
271,236 + -0.7
271,236 + -1.6
271,237 - -1.6
271,237 - +0.9
271,295 + Rru_A0219 0.10 +1.9
271,295 + Rru_A0219 0.10 +0.2
271,296 - Rru_A0219 0.11 +0.5
271,296 - Rru_A0219 0.11 -0.7
271,301 + Rru_A0219 0.13 +0.4
271,302 - Rru_A0219 0.13 -1.0
271,383 + Rru_A0219 0.46 -0.0
271,383 + Rru_A0219 0.46 -1.2
271,434 + Rru_A0219 0.66 -1.3
271,434 + Rru_A0219 0.66 -2.1
271,434 + Rru_A0219 0.66 +0.7
271,435 - Rru_A0219 0.67 +1.0
271,435 - Rru_A0219 0.67 -1.6
271,435 - Rru_A0219 0.67 -1.3
271,438 - Rru_A0219 0.68 -2.2
271,438 - Rru_A0219 0.68 -0.1
271,515 + +2.2
271,515 + -1.8
271,516 - +0.1
271,516 - +0.4
271,516 - -2.1
271,516 - -2.4
271,516 - -0.1
271,831 - Rru_A0220 0.52 -0.8
271,983 + Rru_A0220 0.84 -2.7
271,983 + Rru_A0220 0.84 +0.9

Or see this region's nucleotide sequence