Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0196

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0195 and Rru_A0196 are separated by 80 nucleotidesRru_A0196 and Rru_A0197 are separated by 53 nucleotides Rru_A0195: Rru_A0195 - hypothetical protein (NCBI), at 237,870 to 243,644 _A0195 Rru_A0196: Rru_A0196 - hypothetical protein (NCBI), at 243,725 to 244,675 _A0196 Rru_A0197: Rru_A0197 - hypothetical protein (NCBI), at 244,729 to 246,138 _A0197 Position (kb) 243 244 245Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 242.781 kb on - strand, within Rru_A0195at 242.988 kb on + strand, within Rru_A0195at 242.988 kb on + strand, within Rru_A0195at 242.988 kb on + strand, within Rru_A0195at 242.989 kb on - strand, within Rru_A0195at 242.989 kb on - strand, within Rru_A0195at 242.989 kb on - strand, within Rru_A0195at 242.989 kb on - strand, within Rru_A0195at 242.989 kb on - strand, within Rru_A0195at 243.009 kb on + strand, within Rru_A0195at 243.324 kb on + strandat 243.325 kb on - strandat 243.326 kb on + strandat 243.354 kb on + strandat 243.355 kb on - strandat 243.355 kb on - strandat 243.477 kb on + strandat 243.516 kb on + strandat 243.516 kb on + strandat 243.516 kb on + strandat 243.517 kb on - strandat 243.517 kb on - strandat 243.517 kb on - strandat 243.517 kb on - strandat 243.517 kb on - strandat 243.517 kb on - strandat 243.518 kb on + strandat 243.519 kb on - strandat 243.519 kb on - strandat 243.519 kb on - strandat 244.850 kb on + strandat 244.922 kb on - strand, within Rru_A0197at 244.945 kb on + strand, within Rru_A0197at 244.945 kb on + strand, within Rru_A0197at 244.946 kb on - strand, within Rru_A0197at 244.948 kb on + strand, within Rru_A0197at 244.948 kb on + strand, within Rru_A0197at 244.948 kb on + strand, within Rru_A0197at 244.948 kb on + strand, within Rru_A0197at 244.948 kb on + strand, within Rru_A0197at 244.949 kb on - strand, within Rru_A0197at 244.949 kb on - strand, within Rru_A0197at 244.949 kb on - strand, within Rru_A0197at 244.949 kb on - strand, within Rru_A0197at 244.949 kb on - strand, within Rru_A0197at 244.949 kb on - strand, within Rru_A0197at 245.277 kb on + strand, within Rru_A0197at 245.277 kb on + strand, within Rru_A0197at 245.277 kb on + strand, within Rru_A0197at 245.278 kb on - strand, within Rru_A0197at 245.278 kb on - strand, within Rru_A0197at 245.278 kb on - strand, within Rru_A0197at 245.278 kb on - strand, within Rru_A0197at 245.278 kb on - strand, within Rru_A0197at 245.353 kb on + strand, within Rru_A0197at 245.451 kb on + strand, within Rru_A0197at 245.451 kb on + strand, within Rru_A0197at 245.452 kb on - strand, within Rru_A0197at 245.452 kb on - strand, within Rru_A0197at 245.452 kb on - strand, within Rru_A0197at 245.452 kb on - strand, within Rru_A0197at 245.542 kb on + strand, within Rru_A0197at 245.542 kb on + strand, within Rru_A0197at 245.542 kb on + strand, within Rru_A0197at 245.542 kb on + strand, within Rru_A0197at 245.542 kb on + strand, within Rru_A0197at 245.543 kb on - strand, within Rru_A0197at 245.544 kb on + strand, within Rru_A0197at 245.545 kb on - strand, within Rru_A0197at 245.545 kb on - strand, within Rru_A0197at 245.545 kb on - strand, within Rru_A0197at 245.545 kb on - strand, within Rru_A0197at 245.545 kb on - strand, within Rru_A0197at 245.586 kb on + strand, within Rru_A0197at 245.586 kb on + strand, within Rru_A0197at 245.586 kb on + strand, within Rru_A0197at 245.587 kb on - strand, within Rru_A0197

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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242,781 - Rru_A0195 0.85 -2.4
242,988 + Rru_A0195 0.89 +3.2
242,988 + Rru_A0195 0.89 +0.8
242,988 + Rru_A0195 0.89 -1.0
242,989 - Rru_A0195 0.89 +2.6
242,989 - Rru_A0195 0.89 -1.3
242,989 - Rru_A0195 0.89 -2.9
242,989 - Rru_A0195 0.89 +0.4
242,989 - Rru_A0195 0.89 +0.1
243,009 + Rru_A0195 0.89 -1.8
243,324 + -0.8
243,325 - -1.2
243,326 + -0.3
243,354 + +0.8
243,355 - +0.8
243,355 - +0.4
243,477 + -0.9
243,516 + -0.7
243,516 + -0.1
243,516 + -1.2
243,517 - +0.1
243,517 - +0.9
243,517 - -1.7
243,517 - +0.9
243,517 - -0.4
243,517 - -1.1
243,518 + -2.2
243,519 - -0.3
243,519 - -2.9
243,519 - -1.0
244,850 + -2.1
244,922 - Rru_A0197 0.14 +1.4
244,945 + Rru_A0197 0.15 -1.3
244,945 + Rru_A0197 0.15 -1.8
244,946 - Rru_A0197 0.15 -2.3
244,948 + Rru_A0197 0.16 -1.1
244,948 + Rru_A0197 0.16 +1.4
244,948 + Rru_A0197 0.16 -1.1
244,948 + Rru_A0197 0.16 +0.1
244,948 + Rru_A0197 0.16 -0.1
244,949 - Rru_A0197 0.16 +2.0
244,949 - Rru_A0197 0.16 -1.1
244,949 - Rru_A0197 0.16 +2.0
244,949 - Rru_A0197 0.16 -0.6
244,949 - Rru_A0197 0.16 +0.6
244,949 - Rru_A0197 0.16 +0.4
245,277 + Rru_A0197 0.39 +0.0
245,277 + Rru_A0197 0.39 -2.1
245,277 + Rru_A0197 0.39 +0.6
245,278 - Rru_A0197 0.39 +1.1
245,278 - Rru_A0197 0.39 +0.3
245,278 - Rru_A0197 0.39 +0.0
245,278 - Rru_A0197 0.39 -0.8
245,278 - Rru_A0197 0.39 -0.6
245,353 + Rru_A0197 0.44 -0.3
245,451 + Rru_A0197 0.51 -1.1
245,451 + Rru_A0197 0.51 -0.6
245,452 - Rru_A0197 0.51 +0.6
245,452 - Rru_A0197 0.51 +1.6
245,452 - Rru_A0197 0.51 -2.1
245,452 - Rru_A0197 0.51 +1.3
245,542 + Rru_A0197 0.58 +0.4
245,542 + Rru_A0197 0.58 +1.0
245,542 + Rru_A0197 0.58 -1.0
245,542 + Rru_A0197 0.58 -0.6
245,542 + Rru_A0197 0.58 -0.4
245,543 - Rru_A0197 0.58 +0.0
245,544 + Rru_A0197 0.58 -1.0
245,545 - Rru_A0197 0.58 +0.4
245,545 - Rru_A0197 0.58 +2.3
245,545 - Rru_A0197 0.58 -0.6
245,545 - Rru_A0197 0.58 -2.3
245,545 - Rru_A0197 0.58 +0.8
245,586 + Rru_A0197 0.61 -3.6
245,586 + Rru_A0197 0.61 -4.4
245,586 + Rru_A0197 0.61 +0.7
245,587 - Rru_A0197 0.61 -0.5

Or see this region's nucleotide sequence