Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0194

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0193 and Rru_A0194 are separated by 220 nucleotidesRru_A0194 and Rru_A0195 are separated by 226 nucleotides Rru_A0193: Rru_A0193 - Beta-ketoacyl synthase (NCBI), at 235,912 to 237,135 _A0193 Rru_A0194: Rru_A0194 - hypothetical protein (NCBI), at 237,356 to 237,643 _A0194 Rru_A0195: Rru_A0195 - hypothetical protein (NCBI), at 237,870 to 243,644 _A0195 Position (kb) 237 238Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 236.396 kb on + strand, within Rru_A0193at 236.546 kb on + strand, within Rru_A0193at 236.774 kb on + strand, within Rru_A0193at 236.775 kb on - strand, within Rru_A0193at 236.775 kb on - strand, within Rru_A0193at 236.775 kb on - strand, within Rru_A0193at 237.154 kb on - strandat 237.157 kb on + strandat 237.158 kb on - strandat 237.159 kb on + strandat 237.159 kb on + strandat 237.211 kb on + strandat 237.226 kb on + strandat 237.641 kb on + strandat 237.668 kb on - strandat 237.693 kb on + strandat 237.802 kb on + strandat 237.802 kb on + strandat 237.802 kb on + strandat 237.802 kb on + strandat 237.803 kb on - strandat 237.803 kb on - strandat 237.803 kb on - strandat 237.803 kb on - strandat 237.803 kb on - strandat 237.879 kb on + strandat 237.879 kb on + strandat 237.879 kb on + strandat 237.879 kb on + strandat 237.880 kb on - strandat 237.880 kb on - strandat 237.880 kb on - strandat 237.958 kb on - strandat 237.958 kb on - strandat 237.963 kb on + strandat 237.963 kb on + strandat 237.964 kb on - strandat 237.964 kb on - strandat 238.029 kb on + strandat 238.098 kb on + strandat 238.099 kb on - strandat 238.099 kb on - strandat 238.230 kb on + strandat 238.230 kb on + strandat 238.230 kb on + strandat 238.230 kb on + strandat 238.231 kb on - strandat 238.231 kb on - strandat 238.278 kb on + strandat 238.278 kb on + strandat 238.279 kb on - strandat 238.314 kb on + strandat 238.315 kb on - strandat 238.615 kb on - strand, within Rru_A0195

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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236,396 + Rru_A0193 0.40 -0.1
236,546 + Rru_A0193 0.52 +0.0
236,774 + Rru_A0193 0.70 -1.1
236,775 - Rru_A0193 0.71 -2.5
236,775 - Rru_A0193 0.71 -0.0
236,775 - Rru_A0193 0.71 -2.7
237,154 - +0.7
237,157 + +0.0
237,158 - -0.7
237,159 + -1.5
237,159 + +0.0
237,211 + -0.8
237,226 + -3.4
237,641 + +2.0
237,668 - -1.4
237,693 + -0.8
237,802 + -1.1
237,802 + -3.3
237,802 + +2.9
237,802 + +1.0
237,803 - -2.6
237,803 - +0.7
237,803 - -1.4
237,803 - -0.7
237,803 - -2.1
237,879 + -0.6
237,879 + +1.2
237,879 + -1.4
237,879 + +0.1
237,880 - -0.4
237,880 - -0.6
237,880 - +0.0
237,958 - +1.0
237,958 - -0.5
237,963 + -0.3
237,963 + +1.0
237,964 - -0.8
237,964 - +0.1
238,029 + +0.8
238,098 + +2.5
238,099 - +1.0
238,099 - -1.3
238,230 + +2.0
238,230 + +0.0
238,230 + -1.0
238,230 + -0.4
238,231 - +0.2
238,231 - +0.5
238,278 + -1.6
238,278 + -2.5
238,279 - +2.0
238,314 + -0.7
238,315 - -0.1
238,615 - Rru_A0195 0.13 +1.4

Or see this region's nucleotide sequence