Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0176 and Rru_A0177 are separated by 580 nucleotides Rru_A0177 and Rru_A0178 are separated by 222 nucleotides Rru_A0178 and Rru_A0179 are separated by 16 nucleotides
Rru_A0176: Rru_A0176 - Aminotransferase class-III (NCBI), at 209,161 to 210,102
_A0176
Rru_A0177: Rru_A0177 - Lytic transglycosylase, catalytic (NCBI), at 210,683 to 211,045
_A0177
Rru_A0178: Rru_A0178 - CRISPR-associated protein Cas2, putative (NCBI), at 211,268 to 211,576
_A0178
Rru_A0179: Rru_A0179 - Protein of unknown function DUF83 (NCBI), at 211,593 to 213,335
_A0179
Position (kb) 210
211
212 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 210.684 kb on + strand at 210.684 kb on + strand at 210.684 kb on + strand at 210.711 kb on + strand at 210.711 kb on + strand at 210.711 kb on + strand at 211.040 kb on - strand at 211.040 kb on - strand at 211.164 kb on + strand at 211.164 kb on + strand at 211.164 kb on + strand at 211.164 kb on + strand at 211.358 kb on + strand, within Rru_A0178 at 211.358 kb on + strand, within Rru_A0178 at 211.359 kb on - strand, within Rru_A0178 at 211.359 kb on - strand, within Rru_A0178 at 211.359 kb on - strand, within Rru_A0178 at 211.359 kb on - strand, within Rru_A0178 at 211.359 kb on - strand, within Rru_A0178 at 211.530 kb on + strand, within Rru_A0178 at 211.530 kb on + strand, within Rru_A0178 at 211.530 kb on + strand, within Rru_A0178 at 211.531 kb on - strand, within Rru_A0178 at 211.531 kb on - strand, within Rru_A0178 at 211.542 kb on + strand, within Rru_A0178 at 211.542 kb on + strand, within Rru_A0178 at 211.543 kb on - strand, within Rru_A0178 at 211.606 kb on + strand at 211.606 kb on + strand at 211.606 kb on + strand at 211.606 kb on + strand at 211.607 kb on - strand at 211.607 kb on - strand at 211.738 kb on + strand at 211.739 kb on - strand at 211.795 kb on + strand, within Rru_A0179 at 211.796 kb on - strand, within Rru_A0179 at 211.796 kb on - strand, within Rru_A0179 at 211.830 kb on + strand, within Rru_A0179 at 211.831 kb on - strand, within Rru_A0179 at 211.924 kb on + strand, within Rru_A0179 at 211.924 kb on + strand, within Rru_A0179 at 211.924 kb on + strand, within Rru_A0179 at 211.925 kb on - strand, within Rru_A0179 at 211.925 kb on - strand, within Rru_A0179 at 211.971 kb on + strand, within Rru_A0179 at 211.993 kb on + strand, within Rru_A0179 at 211.993 kb on + strand, within Rru_A0179 at 211.993 kb on + strand, within Rru_A0179 at 211.994 kb on - strand, within Rru_A0179 at 211.994 kb on - strand, within Rru_A0179
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 210,684 + -0.7 210,684 + +2.1 210,684 + +0.4 210,711 + +0.4 210,711 + -2.8 210,711 + +2.1 211,040 - +1.4 211,040 - -3.2 211,164 + +2.0 211,164 + +0.4 211,164 + +0.4 211,164 + +2.0 211,358 + Rru_A0178 0.29 -0.3 211,358 + Rru_A0178 0.29 +0.3 211,359 - Rru_A0178 0.29 +1.0 211,359 - Rru_A0178 0.29 +1.0 211,359 - Rru_A0178 0.29 +0.6 211,359 - Rru_A0178 0.29 +0.7 211,359 - Rru_A0178 0.29 +0.4 211,530 + Rru_A0178 0.85 -1.0 211,530 + Rru_A0178 0.85 -1.7 211,530 + Rru_A0178 0.85 +1.5 211,531 - Rru_A0178 0.85 -2.2 211,531 - Rru_A0178 0.85 +0.7 211,542 + Rru_A0178 0.89 -4.0 211,542 + Rru_A0178 0.89 +0.4 211,543 - Rru_A0178 0.89 +1.6 211,606 + +1.0 211,606 + -0.3 211,606 + +0.4 211,606 + -1.9 211,607 - -1.1 211,607 - -3.3 211,738 + -2.0 211,739 - -1.2 211,795 + Rru_A0179 0.12 -0.6 211,796 - Rru_A0179 0.12 +0.5 211,796 - Rru_A0179 0.12 -0.5 211,830 + Rru_A0179 0.14 +1.7 211,831 - Rru_A0179 0.14 -0.8 211,924 + Rru_A0179 0.19 -3.2 211,924 + Rru_A0179 0.19 +1.4 211,924 + Rru_A0179 0.19 +0.4 211,925 - Rru_A0179 0.19 -2.8 211,925 - Rru_A0179 0.19 -0.7 211,971 + Rru_A0179 0.22 -1.7 211,993 + Rru_A0179 0.23 -1.9 211,993 + Rru_A0179 0.23 +2.7 211,993 + Rru_A0179 0.23 +0.8 211,994 - Rru_A0179 0.23 +1.4 211,994 - Rru_A0179 0.23 +1.2
Or see this region's nucleotide sequence