Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0175 and Rru_A0176 are separated by 79 nucleotides Rru_A0176 and Rru_A0177 are separated by 580 nucleotides
Rru_A0175: Rru_A0175 - CRISPR-associated helicase Cas3, core (NCBI), at 206,319 to 209,081
_A0175
Rru_A0176: Rru_A0176 - Aminotransferase class-III (NCBI), at 209,161 to 210,102
_A0176
Rru_A0177: Rru_A0177 - Lytic transglycosylase, catalytic (NCBI), at 210,683 to 211,045
_A0177
Position (kb) 209
210
211 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 208.161 kb on - strand, within Rru_A0175 at 208.161 kb on - strand, within Rru_A0175 at 208.161 kb on - strand, within Rru_A0175 at 208.161 kb on - strand, within Rru_A0175 at 208.161 kb on - strand, within Rru_A0175 at 208.162 kb on + strand, within Rru_A0175 at 208.162 kb on + strand, within Rru_A0175 at 208.162 kb on + strand, within Rru_A0175 at 208.162 kb on + strand, within Rru_A0175 at 208.163 kb on - strand, within Rru_A0175 at 208.163 kb on - strand, within Rru_A0175 at 208.333 kb on + strand, within Rru_A0175 at 208.334 kb on - strand, within Rru_A0175 at 208.334 kb on - strand, within Rru_A0175 at 208.364 kb on - strand, within Rru_A0175 at 208.916 kb on - strand at 208.916 kb on - strand at 208.977 kb on + strand at 208.978 kb on - strand at 208.978 kb on - strand at 208.978 kb on - strand at 209.140 kb on + strand at 210.684 kb on + strand at 210.684 kb on + strand at 210.684 kb on + strand at 210.711 kb on + strand at 210.711 kb on + strand at 210.711 kb on + strand at 211.040 kb on - strand at 211.040 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 208,161 - Rru_A0175 0.67 +0.0 208,161 - Rru_A0175 0.67 +0.7 208,161 - Rru_A0175 0.67 -1.9 208,161 - Rru_A0175 0.67 +0.4 208,161 - Rru_A0175 0.67 -3.8 208,162 + Rru_A0175 0.67 -1.4 208,162 + Rru_A0175 0.67 +0.3 208,162 + Rru_A0175 0.67 -1.4 208,162 + Rru_A0175 0.67 -1.3 208,163 - Rru_A0175 0.67 -1.0 208,163 - Rru_A0175 0.67 -1.3 208,333 + Rru_A0175 0.73 -1.4 208,334 - Rru_A0175 0.73 +1.3 208,334 - Rru_A0175 0.73 -1.0 208,364 - Rru_A0175 0.74 +0.8 208,916 - +0.8 208,916 - -0.2 208,977 + +0.6 208,978 - -0.7 208,978 - -1.2 208,978 - +0.4 209,140 + -1.7 210,684 + -0.7 210,684 + +2.1 210,684 + +0.4 210,711 + +0.4 210,711 + -2.8 210,711 + +2.1 211,040 - +1.4 211,040 - -3.2
Or see this region's nucleotide sequence