Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0172 and Rru_A0173 are separated by 2 nucleotides Rru_A0173 and Rru_A0174 overlap by 4 nucleotides
Rru_A0172: Rru_A0172 - CRISPR-associated protein, CT1975 (NCBI), at 202,682 to 203,761
_A0172
Rru_A0173: Rru_A0173 - hypothetical protein (NCBI), at 203,764 to 204,366
_A0173
Rru_A0174: Rru_A0174 - hypothetical protein (NCBI), at 204,363 to 206,030
_A0174
Position (kb) 203
204
205 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 202.794 kb on + strand, within Rru_A0172 at 202.794 kb on + strand, within Rru_A0172 at 202.794 kb on + strand, within Rru_A0172 at 202.795 kb on - strand, within Rru_A0172 at 202.795 kb on - strand, within Rru_A0172 at 203.091 kb on + strand, within Rru_A0172 at 203.091 kb on + strand, within Rru_A0172 at 203.091 kb on + strand, within Rru_A0172 at 203.092 kb on - strand, within Rru_A0172 at 203.092 kb on - strand, within Rru_A0172 at 203.098 kb on - strand, within Rru_A0172 at 203.098 kb on - strand, within Rru_A0172 at 203.190 kb on + strand, within Rru_A0172 at 203.190 kb on + strand, within Rru_A0172 at 203.190 kb on + strand, within Rru_A0172 at 203.190 kb on + strand, within Rru_A0172 at 203.191 kb on - strand, within Rru_A0172 at 203.191 kb on - strand, within Rru_A0172 at 203.191 kb on - strand, within Rru_A0172 at 203.191 kb on - strand, within Rru_A0172 at 203.193 kb on + strand, within Rru_A0172 at 203.193 kb on + strand, within Rru_A0172 at 203.193 kb on + strand, within Rru_A0172 at 203.194 kb on - strand, within Rru_A0172 at 203.777 kb on - strand at 203.855 kb on + strand, within Rru_A0173 at 203.855 kb on + strand, within Rru_A0173 at 203.971 kb on + strand, within Rru_A0173 at 203.971 kb on + strand, within Rru_A0173 at 203.971 kb on + strand, within Rru_A0173 at 203.972 kb on - strand, within Rru_A0173 at 204.525 kb on - strand at 204.568 kb on - strand, within Rru_A0174 at 204.568 kb on - strand, within Rru_A0174 at 204.774 kb on + strand, within Rru_A0174 at 204.850 kb on + strand, within Rru_A0174 at 204.850 kb on + strand, within Rru_A0174 at 205.010 kb on - strand, within Rru_A0174 at 205.010 kb on - strand, within Rru_A0174 at 205.036 kb on + strand, within Rru_A0174 at 205.036 kb on + strand, within Rru_A0174 at 205.036 kb on + strand, within Rru_A0174 at 205.037 kb on - strand, within Rru_A0174 at 205.037 kb on - strand, within Rru_A0174 at 205.037 kb on - strand, within Rru_A0174 at 205.126 kb on + strand, within Rru_A0174 at 205.138 kb on + strand, within Rru_A0174 at 205.138 kb on + strand, within Rru_A0174 at 205.138 kb on + strand, within Rru_A0174 at 205.139 kb on - strand, within Rru_A0174 at 205.139 kb on - strand, within Rru_A0174 at 205.139 kb on - strand, within Rru_A0174 at 205.139 kb on - strand, within Rru_A0174
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 202,794 + Rru_A0172 0.10 -0.2 202,794 + Rru_A0172 0.10 +1.5 202,794 + Rru_A0172 0.10 +2.6 202,795 - Rru_A0172 0.10 +0.2 202,795 - Rru_A0172 0.10 +2.0 203,091 + Rru_A0172 0.38 +0.3 203,091 + Rru_A0172 0.38 -0.7 203,091 + Rru_A0172 0.38 -0.2 203,092 - Rru_A0172 0.38 -0.9 203,092 - Rru_A0172 0.38 +1.8 203,098 - Rru_A0172 0.39 -2.2 203,098 - Rru_A0172 0.39 -2.9 203,190 + Rru_A0172 0.47 +0.4 203,190 + Rru_A0172 0.47 +2.5 203,190 + Rru_A0172 0.47 -0.8 203,190 + Rru_A0172 0.47 +0.5 203,191 - Rru_A0172 0.47 +0.5 203,191 - Rru_A0172 0.47 +0.6 203,191 - Rru_A0172 0.47 -2.1 203,191 - Rru_A0172 0.47 +1.1 203,193 + Rru_A0172 0.47 -2.6 203,193 + Rru_A0172 0.47 -2.7 203,193 + Rru_A0172 0.47 -2.3 203,194 - Rru_A0172 0.47 -1.1 203,777 - -0.9 203,855 + Rru_A0173 0.15 -2.7 203,855 + Rru_A0173 0.15 -2.3 203,971 + Rru_A0173 0.34 +0.0 203,971 + Rru_A0173 0.34 -1.0 203,971 + Rru_A0173 0.34 -1.6 203,972 - Rru_A0173 0.34 -0.5 204,525 - +1.5 204,568 - Rru_A0174 0.12 -0.6 204,568 - Rru_A0174 0.12 +1.0 204,774 + Rru_A0174 0.25 +0.5 204,850 + Rru_A0174 0.29 -0.2 204,850 + Rru_A0174 0.29 +2.5 205,010 - Rru_A0174 0.39 -2.0 205,010 - Rru_A0174 0.39 -0.2 205,036 + Rru_A0174 0.40 -1.2 205,036 + Rru_A0174 0.40 -1.4 205,036 + Rru_A0174 0.40 -1.7 205,037 - Rru_A0174 0.40 -1.4 205,037 - Rru_A0174 0.40 -1.4 205,037 - Rru_A0174 0.40 -0.2 205,126 + Rru_A0174 0.46 +0.6 205,138 + Rru_A0174 0.46 +2.6 205,138 + Rru_A0174 0.46 +0.1 205,138 + Rru_A0174 0.46 +3.5 205,139 - Rru_A0174 0.47 +3.2 205,139 - Rru_A0174 0.47 -2.3 205,139 - Rru_A0174 0.47 -1.4 205,139 - Rru_A0174 0.47 +0.9
Or see this region's nucleotide sequence