Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0170 and Rru_A0171 overlap by 4 nucleotides Rru_A0171 and Rru_A0172 are separated by 4 nucleotides Rru_A0172 and Rru_A0173 are separated by 2 nucleotides Rru_A0173 and Rru_A0174 overlap by 4 nucleotides
Rru_A0170: Rru_A0170 - CRISPR-associated protein, CT1974 (NCBI), at 201,233 to 201,895
_A0170
Rru_A0171: Rru_A0171 - CRISPR-associated protein, CT1976 (NCBI), at 201,892 to 202,677
_A0171
Rru_A0172: Rru_A0172 - CRISPR-associated protein, CT1975 (NCBI), at 202,682 to 203,761
_A0172
Rru_A0173: Rru_A0173 - hypothetical protein (NCBI), at 203,764 to 204,366
_A0173
Rru_A0174: Rru_A0174 - hypothetical protein (NCBI), at 204,363 to 206,030
_A0174
Position (kb) 202
203
204 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 201.717 kb on + strand, within Rru_A0170 at 201.718 kb on - strand, within Rru_A0170 at 201.886 kb on + strand at 201.887 kb on - strand at 201.887 kb on - strand at 201.887 kb on - strand at 202.142 kb on + strand, within Rru_A0171 at 202.142 kb on + strand, within Rru_A0171 at 202.229 kb on + strand, within Rru_A0171 at 202.337 kb on + strand, within Rru_A0171 at 202.442 kb on + strand, within Rru_A0171 at 202.443 kb on - strand, within Rru_A0171 at 202.555 kb on + strand, within Rru_A0171 at 202.683 kb on + strand at 202.683 kb on + strand at 202.684 kb on - strand at 202.794 kb on + strand, within Rru_A0172 at 202.794 kb on + strand, within Rru_A0172 at 202.794 kb on + strand, within Rru_A0172 at 202.795 kb on - strand, within Rru_A0172 at 202.795 kb on - strand, within Rru_A0172 at 203.091 kb on + strand, within Rru_A0172 at 203.091 kb on + strand, within Rru_A0172 at 203.091 kb on + strand, within Rru_A0172 at 203.092 kb on - strand, within Rru_A0172 at 203.092 kb on - strand, within Rru_A0172 at 203.098 kb on - strand, within Rru_A0172 at 203.098 kb on - strand, within Rru_A0172 at 203.190 kb on + strand, within Rru_A0172 at 203.190 kb on + strand, within Rru_A0172 at 203.190 kb on + strand, within Rru_A0172 at 203.190 kb on + strand, within Rru_A0172 at 203.191 kb on - strand, within Rru_A0172 at 203.191 kb on - strand, within Rru_A0172 at 203.191 kb on - strand, within Rru_A0172 at 203.191 kb on - strand, within Rru_A0172 at 203.193 kb on + strand, within Rru_A0172 at 203.193 kb on + strand, within Rru_A0172 at 203.193 kb on + strand, within Rru_A0172 at 203.194 kb on - strand, within Rru_A0172 at 203.777 kb on - strand at 203.855 kb on + strand, within Rru_A0173 at 203.855 kb on + strand, within Rru_A0173 at 203.971 kb on + strand, within Rru_A0173 at 203.971 kb on + strand, within Rru_A0173 at 203.971 kb on + strand, within Rru_A0173 at 203.972 kb on - strand, within Rru_A0173 at 204.525 kb on - strand at 204.568 kb on - strand, within Rru_A0174 at 204.568 kb on - strand, within Rru_A0174
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 201,717 + Rru_A0170 0.73 +1.5 201,718 - Rru_A0170 0.73 -3.5 201,886 + +2.2 201,887 - -0.3 201,887 - -0.0 201,887 - -1.9 202,142 + Rru_A0171 0.32 -0.1 202,142 + Rru_A0171 0.32 -2.0 202,229 + Rru_A0171 0.43 -0.6 202,337 + Rru_A0171 0.57 -2.4 202,442 + Rru_A0171 0.70 -1.2 202,443 - Rru_A0171 0.70 +0.0 202,555 + Rru_A0171 0.84 +0.4 202,683 + -0.0 202,683 + -3.6 202,684 - +0.3 202,794 + Rru_A0172 0.10 -0.2 202,794 + Rru_A0172 0.10 +1.5 202,794 + Rru_A0172 0.10 +2.6 202,795 - Rru_A0172 0.10 +0.2 202,795 - Rru_A0172 0.10 +2.0 203,091 + Rru_A0172 0.38 +0.3 203,091 + Rru_A0172 0.38 -0.7 203,091 + Rru_A0172 0.38 -0.2 203,092 - Rru_A0172 0.38 -0.9 203,092 - Rru_A0172 0.38 +1.8 203,098 - Rru_A0172 0.39 -2.2 203,098 - Rru_A0172 0.39 -2.9 203,190 + Rru_A0172 0.47 +0.4 203,190 + Rru_A0172 0.47 +2.5 203,190 + Rru_A0172 0.47 -0.8 203,190 + Rru_A0172 0.47 +0.5 203,191 - Rru_A0172 0.47 +0.5 203,191 - Rru_A0172 0.47 +0.6 203,191 - Rru_A0172 0.47 -2.1 203,191 - Rru_A0172 0.47 +1.1 203,193 + Rru_A0172 0.47 -2.6 203,193 + Rru_A0172 0.47 -2.7 203,193 + Rru_A0172 0.47 -2.3 203,194 - Rru_A0172 0.47 -1.1 203,777 - -0.9 203,855 + Rru_A0173 0.15 -2.7 203,855 + Rru_A0173 0.15 -2.3 203,971 + Rru_A0173 0.34 +0.0 203,971 + Rru_A0173 0.34 -1.0 203,971 + Rru_A0173 0.34 -1.6 203,972 - Rru_A0173 0.34 -0.5 204,525 - +1.5 204,568 - Rru_A0174 0.12 -0.6 204,568 - Rru_A0174 0.12 +1.0
Or see this region's nucleotide sequence