Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0153 and Rru_A0154 are separated by 5 nucleotides Rru_A0154 and Rru_A0155 are separated by 197 nucleotides
Rru_A0153: Rru_A0153 - Endonuclease III/Nth (NCBI), at 177,869 to 178,582
_A0153
Rru_A0154: Rru_A0154 - Dihydrodipicolinate reductase (NCBI), at 178,588 to 179,385
_A0154
Rru_A0155: Rru_A0155 - Transcriptional Regulator, TetR family (NCBI), at 179,583 to 180,251
_A0155
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 177.737 kb on + strand at 177.737 kb on + strand at 177.755 kb on + strand at 177.757 kb on + strand at 177.843 kb on + strand at 177.850 kb on + strand at 177.850 kb on + strand at 177.851 kb on - strand at 177.872 kb on + strand at 177.873 kb on - strand at 178.087 kb on + strand, within Rru_A0153 at 178.087 kb on + strand, within Rru_A0153 at 178.087 kb on + strand, within Rru_A0153 at 178.088 kb on - strand, within Rru_A0153 at 178.284 kb on + strand, within Rru_A0153 at 178.284 kb on + strand, within Rru_A0153 at 178.284 kb on + strand, within Rru_A0153 at 178.285 kb on - strand, within Rru_A0153 at 178.285 kb on - strand, within Rru_A0153 at 178.285 kb on - strand, within Rru_A0153 at 178.431 kb on + strand, within Rru_A0153 at 178.432 kb on - strand, within Rru_A0153 at 179.488 kb on + strand at 179.489 kb on - strand at 179.585 kb on - strand at 179.593 kb on + strand at 179.824 kb on - strand, within Rru_A0155 at 180.043 kb on + strand, within Rru_A0155 at 180.043 kb on + strand, within Rru_A0155 at 180.043 kb on + strand, within Rru_A0155 at 180.043 kb on + strand, within Rru_A0155 at 180.044 kb on - strand, within Rru_A0155 at 180.044 kb on - strand, within Rru_A0155 at 180.103 kb on + strand, within Rru_A0155 at 180.104 kb on - strand, within Rru_A0155 at 180.262 kb on - strand at 180.279 kb on + strand at 180.279 kb on + strand at 180.279 kb on + strand at 180.280 kb on - strand at 180.280 kb on - strand at 180.280 kb on - strand at 180.280 kb on - strand at 180.313 kb on + strand at 180.314 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 177,737 + +0.0 177,737 + -1.6 177,755 + +1.8 177,757 + -1.4 177,843 + -2.7 177,850 + +1.0 177,850 + -2.1 177,851 - -1.0 177,872 + +0.6 177,873 - -2.0 178,087 + Rru_A0153 0.31 +1.6 178,087 + Rru_A0153 0.31 -1.6 178,087 + Rru_A0153 0.31 +0.2 178,088 - Rru_A0153 0.31 -3.1 178,284 + Rru_A0153 0.58 -1.4 178,284 + Rru_A0153 0.58 -2.0 178,284 + Rru_A0153 0.58 +0.4 178,285 - Rru_A0153 0.58 +0.6 178,285 - Rru_A0153 0.58 +0.7 178,285 - Rru_A0153 0.58 -3.0 178,431 + Rru_A0153 0.79 -1.7 178,432 - Rru_A0153 0.79 +0.0 179,488 + -0.3 179,489 - +0.1 179,585 - -2.4 179,593 + -0.3 179,824 - Rru_A0155 0.36 -1.3 180,043 + Rru_A0155 0.69 -1.2 180,043 + Rru_A0155 0.69 -3.6 180,043 + Rru_A0155 0.69 +2.0 180,043 + Rru_A0155 0.69 +1.0 180,044 - Rru_A0155 0.69 +1.4 180,044 - Rru_A0155 0.69 -1.0 180,103 + Rru_A0155 0.78 -0.3 180,104 - Rru_A0155 0.78 +0.4 180,262 - -0.3 180,279 + +1.0 180,279 + -0.1 180,279 + -2.1 180,280 - -3.1 180,280 - -1.0 180,280 - -1.4 180,280 - -3.0 180,313 + -1.6 180,314 - -0.2
Or see this region's nucleotide sequence