Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0142

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0141 and Rru_A0142 are separated by 323 nucleotidesRru_A0142 and Rru_A0143 are separated by 78 nucleotidesRru_A0143 and Rru_A0144 overlap by 14 nucleotides Rru_A0141: Rru_A0141 - Porphobilinogen synthase (NCBI), at 164,512 to 165,495 _A0141 Rru_A0142: Rru_A0142 - Putative cyclase (NCBI), at 165,819 to 166,781 _A0142 Rru_A0143: Rru_A0143 - GCN5-related N-acetyltransferase (NCBI), at 166,860 to 167,525 _A0143 Rru_A0144: Rru_A0144 - NADH:flavin oxidoreductase/NADH oxidase (NCBI), at 167,512 to 168,615 _A0144 Position (kb) 165 166 167Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 164.834 kb on + strand, within Rru_A0141at 164.834 kb on + strand, within Rru_A0141at 164.834 kb on + strand, within Rru_A0141at 164.835 kb on - strand, within Rru_A0141at 164.835 kb on - strand, within Rru_A0141at 164.835 kb on - strand, within Rru_A0141at 164.872 kb on + strand, within Rru_A0141at 164.916 kb on - strand, within Rru_A0141at 164.922 kb on + strand, within Rru_A0141at 165.182 kb on - strand, within Rru_A0141at 165.495 kb on + strandat 165.495 kb on + strandat 165.495 kb on + strandat 165.495 kb on + strandat 165.496 kb on - strandat 165.496 kb on - strandat 165.538 kb on + strandat 165.538 kb on + strandat 165.539 kb on - strandat 165.605 kb on - strandat 165.634 kb on + strandat 165.634 kb on + strandat 165.634 kb on + strandat 165.634 kb on + strandat 165.635 kb on - strandat 165.946 kb on + strand, within Rru_A0142at 165.946 kb on + strand, within Rru_A0142at 165.946 kb on + strand, within Rru_A0142at 165.947 kb on - strand, within Rru_A0142at 165.947 kb on - strand, within Rru_A0142at 166.106 kb on + strand, within Rru_A0142at 166.107 kb on - strand, within Rru_A0142at 166.318 kb on + strand, within Rru_A0142at 166.319 kb on - strand, within Rru_A0142at 166.319 kb on - strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.378 kb on + strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.379 kb on - strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.471 kb on + strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.472 kb on - strand, within Rru_A0142at 166.499 kb on + strand, within Rru_A0142at 166.501 kb on + strand, within Rru_A0142at 166.501 kb on + strand, within Rru_A0142at 166.501 kb on + strand, within Rru_A0142at 166.502 kb on - strand, within Rru_A0142at 166.502 kb on - strand, within Rru_A0142at 166.502 kb on - strand, within Rru_A0142at 166.502 kb on - strand, within Rru_A0142at 166.529 kb on - strand, within Rru_A0142at 166.630 kb on + strand, within Rru_A0142at 166.630 kb on + strand, within Rru_A0142at 166.630 kb on + strand, within Rru_A0142at 166.631 kb on - strand, within Rru_A0142at 166.631 kb on - strand, within Rru_A0142at 166.825 kb on + strandat 166.826 kb on - strandat 166.826 kb on - strandat 166.827 kb on + strandat 166.828 kb on - strandat 166.828 kb on - strandat 166.828 kb on - strandat 166.828 kb on - strandat 166.878 kb on + strandat 166.879 kb on - strandat 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 166.945 kb on - strand, within Rru_A0143at 167.009 kb on + strand, within Rru_A0143at 167.009 kb on + strand, within Rru_A0143at 167.009 kb on + strand, within Rru_A0143at 167.010 kb on - strand, within Rru_A0143at 167.010 kb on - strand, within Rru_A0143at 167.148 kb on + strand, within Rru_A0143at 167.148 kb on + strand, within Rru_A0143at 167.148 kb on + strand, within Rru_A0143at 167.148 kb on + strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.149 kb on - strand, within Rru_A0143at 167.153 kb on + strand, within Rru_A0143at 167.154 kb on - strand, within Rru_A0143at 167.200 kb on + strand, within Rru_A0143at 167.513 kb on + strandat 167.561 kb on + strandat 167.561 kb on + strandat 167.562 kb on - strandat 167.562 kb on - strandat 167.627 kb on + strand, within Rru_A0144at 167.627 kb on + strand, within Rru_A0144at 167.628 kb on - strand, within Rru_A0144at 167.628 kb on - strand, within Rru_A0144

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
164,834 + Rru_A0141 0.33 -0.3
164,834 + Rru_A0141 0.33 +1.0
164,834 + Rru_A0141 0.33 -0.2
164,835 - Rru_A0141 0.33 +0.0
164,835 - Rru_A0141 0.33 -2.1
164,835 - Rru_A0141 0.33 -0.2
164,872 + Rru_A0141 0.37 -1.9
164,916 - Rru_A0141 0.41 -1.0
164,922 + Rru_A0141 0.42 -2.0
165,182 - Rru_A0141 0.68 -0.3
165,495 + +0.2
165,495 + -1.7
165,495 + -0.8
165,495 + -0.5
165,496 - +0.3
165,496 - -0.2
165,538 + -0.4
165,538 + -0.1
165,539 - -2.6
165,605 - +2.9
165,634 + +0.0
165,634 + -0.7
165,634 + +2.0
165,634 + +0.6
165,635 - -0.7
165,946 + Rru_A0142 0.13 -2.4
165,946 + Rru_A0142 0.13 +0.7
165,946 + Rru_A0142 0.13 +1.9
165,947 - Rru_A0142 0.13 -2.2
165,947 - Rru_A0142 0.13 +0.4
166,106 + Rru_A0142 0.30 -3.1
166,107 - Rru_A0142 0.30 +0.5
166,318 + Rru_A0142 0.52 -0.8
166,319 - Rru_A0142 0.52 -1.1
166,319 - Rru_A0142 0.52 -2.6
166,378 + Rru_A0142 0.58 +0.3
166,378 + Rru_A0142 0.58 -1.2
166,378 + Rru_A0142 0.58 -0.2
166,378 + Rru_A0142 0.58 +1.1
166,378 + Rru_A0142 0.58 -2.6
166,378 + Rru_A0142 0.58 -0.3
166,378 + Rru_A0142 0.58 +1.4
166,378 + Rru_A0142 0.58 -3.8
166,378 + Rru_A0142 0.58 -0.3
166,379 - Rru_A0142 0.58 -0.8
166,379 - Rru_A0142 0.58 -0.1
166,379 - Rru_A0142 0.58 -1.8
166,379 - Rru_A0142 0.58 +2.8
166,379 - Rru_A0142 0.58 +0.8
166,471 + Rru_A0142 0.68 +0.4
166,471 + Rru_A0142 0.68 -1.1
166,471 + Rru_A0142 0.68 -0.6
166,471 + Rru_A0142 0.68 -2.3
166,471 + Rru_A0142 0.68 -2.3
166,472 - Rru_A0142 0.68 -0.5
166,472 - Rru_A0142 0.68 -1.3
166,472 - Rru_A0142 0.68 -0.2
166,472 - Rru_A0142 0.68 +0.5
166,472 - Rru_A0142 0.68 +2.5
166,472 - Rru_A0142 0.68 -2.9
166,499 + Rru_A0142 0.71 -0.6
166,501 + Rru_A0142 0.71 -0.9
166,501 + Rru_A0142 0.71 +2.3
166,501 + Rru_A0142 0.71 +1.5
166,502 - Rru_A0142 0.71 -1.6
166,502 - Rru_A0142 0.71 +1.6
166,502 - Rru_A0142 0.71 -0.8
166,502 - Rru_A0142 0.71 +0.2
166,529 - Rru_A0142 0.74 +0.6
166,630 + Rru_A0142 0.84 +1.6
166,630 + Rru_A0142 0.84 -0.6
166,630 + Rru_A0142 0.84 +1.6
166,631 - Rru_A0142 0.84 -1.8
166,631 - Rru_A0142 0.84 +1.6
166,825 + -1.6
166,826 - +1.0
166,826 - +2.5
166,827 + +0.2
166,828 - +1.0
166,828 - -0.6
166,828 - +1.4
166,828 - -1.2
166,878 + +2.0
166,879 - +0.0
166,945 - Rru_A0143 0.13 +2.0
166,945 - Rru_A0143 0.13 +2.0
166,945 - Rru_A0143 0.13 -1.2
166,945 - Rru_A0143 0.13 -0.0
166,945 - Rru_A0143 0.13 +0.0
166,945 - Rru_A0143 0.13 -2.2
167,009 + Rru_A0143 0.22 -1.8
167,009 + Rru_A0143 0.22 -1.0
167,009 + Rru_A0143 0.22 +1.8
167,010 - Rru_A0143 0.23 +2.6
167,010 - Rru_A0143 0.23 +1.9
167,148 + Rru_A0143 0.43 -1.3
167,148 + Rru_A0143 0.43 -0.3
167,148 + Rru_A0143 0.43 +0.1
167,148 + Rru_A0143 0.43 +3.5
167,149 - Rru_A0143 0.43 +0.0
167,149 - Rru_A0143 0.43 -0.1
167,149 - Rru_A0143 0.43 +0.6
167,149 - Rru_A0143 0.43 -0.6
167,149 - Rru_A0143 0.43 -0.8
167,149 - Rru_A0143 0.43 -3.3
167,149 - Rru_A0143 0.43 -0.3
167,149 - Rru_A0143 0.43 -2.6
167,153 + Rru_A0143 0.44 -2.3
167,154 - Rru_A0143 0.44 +2.2
167,200 + Rru_A0143 0.51 -1.3
167,513 + -1.3
167,561 + -2.0
167,561 + +2.1
167,562 - -2.1
167,562 - -1.8
167,627 + Rru_A0144 0.10 +1.0
167,627 + Rru_A0144 0.10 +0.6
167,628 - Rru_A0144 0.11 -0.2
167,628 - Rru_A0144 0.11 -2.6

Or see this region's nucleotide sequence