Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0138

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0137 and Rru_A0138 are separated by 25 nucleotidesRru_A0138 and Rru_A0139 are separated by 278 nucleotidesRru_A0139 and Rru_A0140 are separated by 72 nucleotides Rru_A0137: Rru_A0137 - TRAP transporter solute receptor, TAXI family (NCBI), at 160,535 to 161,587 _A0137 Rru_A0138: Rru_A0138 - Leucyl aminopeptidase (NCBI), at 161,613 to 163,004 _A0138 Rru_A0139: Rru_A0139 - Transcriptional Regulator, MarR family (NCBI), at 163,283 to 163,636 _A0139 Rru_A0140: Rru_A0140 - Transcriptional Regulator, AraC family (NCBI), at 163,709 to 164,479 _A0140 Position (kb) 161 162 163 164Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 160.685 kb on + strand, within Rru_A0137at 160.686 kb on - strand, within Rru_A0137at 160.686 kb on - strand, within Rru_A0137at 160.816 kb on + strand, within Rru_A0137at 160.816 kb on + strand, within Rru_A0137at 160.887 kb on - strand, within Rru_A0137at 160.887 kb on - strand, within Rru_A0137at 160.887 kb on - strand, within Rru_A0137at 160.888 kb on + strand, within Rru_A0137at 160.888 kb on + strand, within Rru_A0137at 160.949 kb on + strand, within Rru_A0137at 160.949 kb on + strand, within Rru_A0137at 160.949 kb on + strand, within Rru_A0137at 160.949 kb on + strand, within Rru_A0137at 160.950 kb on - strand, within Rru_A0137at 160.950 kb on - strand, within Rru_A0137at 160.950 kb on - strand, within Rru_A0137at 160.950 kb on - strand, within Rru_A0137at 160.951 kb on + strand, within Rru_A0137at 160.952 kb on - strand, within Rru_A0137at 160.952 kb on - strand, within Rru_A0137at 160.952 kb on - strand, within Rru_A0137at 161.321 kb on + strand, within Rru_A0137at 161.321 kb on + strand, within Rru_A0137at 161.322 kb on - strand, within Rru_A0137at 161.322 kb on - strand, within Rru_A0137at 161.537 kb on + strandat 161.538 kb on - strandat 161.538 kb on - strandat 161.538 kb on - strandat 161.538 kb on - strandat 161.838 kb on + strand, within Rru_A0138at 161.839 kb on - strand, within Rru_A0138at 161.880 kb on + strand, within Rru_A0138at 161.952 kb on + strand, within Rru_A0138at 161.953 kb on - strand, within Rru_A0138at 162.083 kb on + strand, within Rru_A0138at 162.084 kb on - strand, within Rru_A0138at 162.198 kb on + strand, within Rru_A0138at 162.198 kb on + strand, within Rru_A0138at 162.198 kb on + strand, within Rru_A0138at 162.198 kb on + strand, within Rru_A0138at 162.199 kb on - strand, within Rru_A0138at 162.199 kb on - strand, within Rru_A0138at 162.199 kb on - strand, within Rru_A0138at 162.199 kb on - strand, within Rru_A0138at 162.371 kb on + strand, within Rru_A0138at 162.372 kb on - strand, within Rru_A0138at 162.372 kb on - strand, within Rru_A0138at 162.542 kb on + strand, within Rru_A0138at 162.543 kb on - strand, within Rru_A0138at 162.667 kb on + strand, within Rru_A0138at 162.667 kb on + strand, within Rru_A0138at 162.668 kb on - strand, within Rru_A0138at 163.061 kb on + strandat 163.138 kb on + strandat 163.156 kb on + strandat 163.157 kb on - strandat 163.163 kb on + strandat 163.163 kb on + strandat 163.163 kb on + strandat 163.164 kb on - strandat 163.164 kb on - strandat 163.164 kb on - strandat 163.166 kb on + strandat 163.195 kb on + strandat 163.196 kb on - strandat 163.196 kb on - strandat 163.196 kb on - strandat 163.268 kb on + strandat 163.320 kb on + strand, within Rru_A0139at 163.321 kb on - strand, within Rru_A0139at 163.403 kb on + strand, within Rru_A0139at 163.404 kb on - strand, within Rru_A0139at 163.404 kb on - strand, within Rru_A0139at 163.516 kb on + strand, within Rru_A0139at 163.516 kb on + strand, within Rru_A0139at 163.516 kb on + strand, within Rru_A0139at 163.517 kb on - strand, within Rru_A0139at 163.676 kb on - strandat 163.676 kb on - strandat 163.684 kb on + strandat 163.684 kb on + strandat 163.684 kb on + strandat 163.684 kb on + strandat 163.684 kb on + strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.685 kb on - strandat 163.687 kb on - strandat 163.717 kb on + strandat 163.718 kb on - strandat 163.730 kb on + strandat 163.730 kb on + strandat 163.730 kb on + strandat 163.731 kb on - strandat 163.731 kb on - strandat 163.776 kb on - strandat 163.776 kb on - strandat 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.827 kb on + strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.828 kb on - strand, within Rru_A0140at 163.829 kb on + strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.830 kb on - strand, within Rru_A0140at 163.868 kb on + strand, within Rru_A0140at 163.868 kb on + strand, within Rru_A0140at 163.868 kb on + strand, within Rru_A0140at 163.869 kb on - strand, within Rru_A0140at 163.869 kb on - strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.964 kb on + strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.965 kb on - strand, within Rru_A0140at 163.967 kb on - strand, within Rru_A0140

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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160,685 + Rru_A0137 0.14 -0.8
160,686 - Rru_A0137 0.14 -2.8
160,686 - Rru_A0137 0.14 +0.0
160,816 + Rru_A0137 0.27 -2.1
160,816 + Rru_A0137 0.27 +0.4
160,887 - Rru_A0137 0.33 -1.0
160,887 - Rru_A0137 0.33 -1.8
160,887 - Rru_A0137 0.33 -3.1
160,888 + Rru_A0137 0.34 -1.7
160,888 + Rru_A0137 0.34 -1.4
160,949 + Rru_A0137 0.39 -2.4
160,949 + Rru_A0137 0.39 -2.7
160,949 + Rru_A0137 0.39 -1.7
160,949 + Rru_A0137 0.39 -3.3
160,950 - Rru_A0137 0.39 -3.4
160,950 - Rru_A0137 0.39 -1.3
160,950 - Rru_A0137 0.39 -2.0
160,950 - Rru_A0137 0.39 -3.3
160,951 + Rru_A0137 0.40 -1.8
160,952 - Rru_A0137 0.40 -0.8
160,952 - Rru_A0137 0.40 -2.0
160,952 - Rru_A0137 0.40 -2.7
161,321 + Rru_A0137 0.75 -2.8
161,321 + Rru_A0137 0.75 -3.4
161,322 - Rru_A0137 0.75 -3.9
161,322 - Rru_A0137 0.75 -3.7
161,537 + -1.6
161,538 - +2.4
161,538 - -1.7
161,538 - -0.7
161,538 - -0.0
161,838 + Rru_A0138 0.16 +0.4
161,839 - Rru_A0138 0.16 -0.5
161,880 + Rru_A0138 0.19 -1.0
161,952 + Rru_A0138 0.24 -0.6
161,953 - Rru_A0138 0.24 +1.2
162,083 + Rru_A0138 0.34 -0.6
162,084 - Rru_A0138 0.34 -1.4
162,198 + Rru_A0138 0.42 -1.8
162,198 + Rru_A0138 0.42 +0.4
162,198 + Rru_A0138 0.42 -1.8
162,198 + Rru_A0138 0.42 +0.0
162,199 - Rru_A0138 0.42 +2.0
162,199 - Rru_A0138 0.42 -0.4
162,199 - Rru_A0138 0.42 -1.5
162,199 - Rru_A0138 0.42 -0.3
162,371 + Rru_A0138 0.54 +1.0
162,372 - Rru_A0138 0.55 -3.4
162,372 - Rru_A0138 0.55 +0.4
162,542 + Rru_A0138 0.67 +0.2
162,543 - Rru_A0138 0.67 -3.2
162,667 + Rru_A0138 0.76 -1.6
162,667 + Rru_A0138 0.76 -1.3
162,668 - Rru_A0138 0.76 -0.6
163,061 + +2.0
163,138 + -1.4
163,156 + -0.8
163,157 - -1.4
163,163 + +1.0
163,163 + +1.0
163,163 + +0.2
163,164 - -2.0
163,164 - -0.3
163,164 - +0.3
163,166 + -1.7
163,195 + -2.6
163,196 - +0.4
163,196 - -0.3
163,196 - -0.8
163,268 + -2.0
163,320 + Rru_A0139 0.10 -1.4
163,321 - Rru_A0139 0.11 -4.3
163,403 + Rru_A0139 0.34 -0.5
163,404 - Rru_A0139 0.34 -1.2
163,404 - Rru_A0139 0.34 -0.3
163,516 + Rru_A0139 0.66 -0.3
163,516 + Rru_A0139 0.66 -0.4
163,516 + Rru_A0139 0.66 -1.5
163,517 - Rru_A0139 0.66 -1.0
163,676 - +1.0
163,676 - -1.0
163,684 + +0.5
163,684 + -1.9
163,684 + +2.0
163,684 + -1.4
163,684 + -1.7
163,685 - +1.5
163,685 - -2.2
163,685 - +1.5
163,685 - +0.1
163,685 - -1.4
163,685 - +0.4
163,685 - -1.0
163,685 - -4.1
163,687 - +0.9
163,717 + -1.4
163,718 - -0.3
163,730 + -0.3
163,730 + +0.1
163,730 + +0.4
163,731 - -0.9
163,731 - +0.2
163,776 - +0.4
163,776 - -0.1
163,827 + Rru_A0140 0.15 -1.6
163,827 + Rru_A0140 0.15 -2.4
163,827 + Rru_A0140 0.15 +1.0
163,827 + Rru_A0140 0.15 +0.0
163,827 + Rru_A0140 0.15 +2.0
163,827 + Rru_A0140 0.15 +0.8
163,827 + Rru_A0140 0.15 -0.4
163,827 + Rru_A0140 0.15 -0.3
163,828 - Rru_A0140 0.15 -1.1
163,828 - Rru_A0140 0.15 -0.5
163,828 - Rru_A0140 0.15 +1.8
163,828 - Rru_A0140 0.15 -0.8
163,828 - Rru_A0140 0.15 +3.4
163,829 + Rru_A0140 0.16 -1.6
163,830 - Rru_A0140 0.16 +1.3
163,830 - Rru_A0140 0.16 -0.8
163,830 - Rru_A0140 0.16 +3.7
163,830 - Rru_A0140 0.16 +0.5
163,830 - Rru_A0140 0.16 +1.0
163,868 + Rru_A0140 0.21 +0.8
163,868 + Rru_A0140 0.21 +1.9
163,868 + Rru_A0140 0.21 -0.2
163,869 - Rru_A0140 0.21 +1.4
163,869 - Rru_A0140 0.21 -0.0
163,964 + Rru_A0140 0.33 +0.1
163,964 + Rru_A0140 0.33 +1.8
163,964 + Rru_A0140 0.33 +0.5
163,964 + Rru_A0140 0.33 -0.8
163,964 + Rru_A0140 0.33 +0.7
163,965 - Rru_A0140 0.33 +3.1
163,965 - Rru_A0140 0.33 -2.0
163,965 - Rru_A0140 0.33 +1.4
163,965 - Rru_A0140 0.33 -0.3
163,965 - Rru_A0140 0.33 -0.6
163,967 - Rru_A0140 0.33 -1.7

Or see this region's nucleotide sequence