Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0124 and Rru_A0125 overlap by 4 nucleotides Rru_A0125 and Rru_A0126 overlap by 4 nucleotides Rru_A0126 and Rru_A0127 overlap by 4 nucleotides
Rru_A0124: Rru_A0124 - Putative diguanylate phosphodiesterase (EAL domain) (NCBI), at 144,259 to 145,608
_A0124
Rru_A0125: Rru_A0125 - diguanylate phosphodiesterase (EAL domain) (NCBI), at 145,605 to 146,954
_A0125
Rru_A0126: Rru_A0126 - ABC transporter component (NCBI), at 146,951 to 147,766
_A0126
Rru_A0127: Rru_A0127 - ABC-2 transporter component (NCBI), at 147,763 to 148,611
_A0127
Position (kb) 145
146
147 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 144.765 kb on + strand, within Rru_A0124 at 145.431 kb on + strand, within Rru_A0124 at 145.431 kb on + strand, within Rru_A0124 at 145.431 kb on + strand, within Rru_A0124 at 145.431 kb on + strand, within Rru_A0124 at 145.432 kb on - strand, within Rru_A0124 at 145.432 kb on - strand, within Rru_A0124 at 145.432 kb on - strand, within Rru_A0124 at 145.566 kb on + strand at 145.566 kb on + strand at 145.566 kb on + strand at 145.566 kb on + strand at 145.566 kb on + strand at 145.778 kb on - strand, within Rru_A0125 at 146.439 kb on + strand, within Rru_A0125 at 146.440 kb on - strand, within Rru_A0125 at 146.602 kb on - strand, within Rru_A0125 at 146.602 kb on - strand, within Rru_A0125 at 146.620 kb on - strand, within Rru_A0125 at 146.620 kb on - strand, within Rru_A0125 at 146.620 kb on - strand, within Rru_A0125 at 146.709 kb on + strand, within Rru_A0125 at 146.709 kb on + strand, within Rru_A0125 at 146.709 kb on + strand, within Rru_A0125 at 146.710 kb on - strand, within Rru_A0125 at 146.710 kb on - strand, within Rru_A0125 at 146.886 kb on + strand at 146.886 kb on + strand at 146.886 kb on + strand at 146.886 kb on + strand at 146.886 kb on + strand at 146.886 kb on + strand at 146.886 kb on + strand at 146.886 kb on + strand at 146.886 kb on + strand at 146.886 kb on + strand at 146.886 kb on + strand at 146.887 kb on - strand at 146.887 kb on - strand at 146.887 kb on - strand at 146.887 kb on - strand at 146.887 kb on - strand at 146.887 kb on - strand at 146.887 kb on - strand at 146.887 kb on - strand at 146.887 kb on - strand at 146.997 kb on - strand at 147.178 kb on + strand, within Rru_A0126 at 147.178 kb on + strand, within Rru_A0126 at 147.178 kb on + strand, within Rru_A0126 at 147.178 kb on + strand, within Rru_A0126 at 147.179 kb on - strand, within Rru_A0126 at 147.179 kb on - strand, within Rru_A0126 at 147.230 kb on + strand, within Rru_A0126 at 147.230 kb on + strand, within Rru_A0126 at 147.231 kb on - strand, within Rru_A0126 at 147.231 kb on - strand, within Rru_A0126 at 147.278 kb on + strand, within Rru_A0126 at 147.278 kb on + strand, within Rru_A0126 at 147.278 kb on + strand, within Rru_A0126 at 147.279 kb on - strand, within Rru_A0126 at 147.279 kb on - strand, within Rru_A0126 at 147.291 kb on - strand, within Rru_A0126 at 147.553 kb on + strand, within Rru_A0126 at 147.553 kb on + strand, within Rru_A0126 at 147.554 kb on - strand, within Rru_A0126 at 147.554 kb on - strand, within Rru_A0126 at 147.866 kb on - strand, within Rru_A0127 at 147.907 kb on + strand, within Rru_A0127
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 144,765 + Rru_A0124 0.37 -1.4 145,431 + Rru_A0124 0.87 -3.3 145,431 + Rru_A0124 0.87 +0.7 145,431 + Rru_A0124 0.87 -1.7 145,431 + Rru_A0124 0.87 -0.5 145,432 - Rru_A0124 0.87 -0.6 145,432 - Rru_A0124 0.87 -1.3 145,432 - Rru_A0124 0.87 -2.1 145,566 + +2.1 145,566 + -2.0 145,566 + +1.0 145,566 + +1.0 145,566 + +0.3 145,778 - Rru_A0125 0.13 -2.4 146,439 + Rru_A0125 0.62 +1.0 146,440 - Rru_A0125 0.62 +0.0 146,602 - Rru_A0125 0.74 +2.0 146,602 - Rru_A0125 0.74 +0.4 146,620 - Rru_A0125 0.75 -2.0 146,620 - Rru_A0125 0.75 -3.2 146,620 - Rru_A0125 0.75 +0.6 146,709 + Rru_A0125 0.82 -0.2 146,709 + Rru_A0125 0.82 -1.7 146,709 + Rru_A0125 0.82 -0.6 146,710 - Rru_A0125 0.82 +1.1 146,710 - Rru_A0125 0.82 +0.4 146,886 + -2.0 146,886 + +1.2 146,886 + +0.7 146,886 + -0.8 146,886 + -1.0 146,886 + +0.0 146,886 + -0.8 146,886 + +2.4 146,886 + -2.4 146,886 + +0.3 146,886 + +0.3 146,887 - -0.0 146,887 - -0.3 146,887 - +1.8 146,887 - +0.2 146,887 - -0.0 146,887 - -1.4 146,887 - -3.3 146,887 - +1.6 146,887 - -0.6 146,997 - +0.8 147,178 + Rru_A0126 0.28 -4.0 147,178 + Rru_A0126 0.28 +0.4 147,178 + Rru_A0126 0.28 -2.2 147,178 + Rru_A0126 0.28 -0.5 147,179 - Rru_A0126 0.28 +1.0 147,179 - Rru_A0126 0.28 -2.7 147,230 + Rru_A0126 0.34 +0.0 147,230 + Rru_A0126 0.34 -1.4 147,231 - Rru_A0126 0.34 -2.5 147,231 - Rru_A0126 0.34 -3.4 147,278 + Rru_A0126 0.40 +0.5 147,278 + Rru_A0126 0.40 +2.0 147,278 + Rru_A0126 0.40 -2.5 147,279 - Rru_A0126 0.40 +3.6 147,279 - Rru_A0126 0.40 +1.5 147,291 - Rru_A0126 0.42 +1.1 147,553 + Rru_A0126 0.74 -1.4 147,553 + Rru_A0126 0.74 -1.2 147,554 - Rru_A0126 0.74 -0.6 147,554 - Rru_A0126 0.74 -0.6 147,866 - Rru_A0127 0.12 -2.2 147,907 + Rru_A0127 0.17 +0.5
Or see this region's nucleotide sequence