Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0119

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0118 and Rru_A0119 are separated by 83 nucleotidesRru_A0119 and Rru_A0120 are separated by 669 nucleotides Rru_A0118: Rru_A0118 - type II secretion system protein E (NCBI), at 138,055 to 139,101 _A0118 Rru_A0119: Rru_A0119 - Protein of unknown function DUF1328 (NCBI), at 139,185 to 139,355 _A0119 Rru_A0120: Rru_A0120 - chemotaxis sensory transducer (NCBI), at 140,025 to 141,362 _A0120 Position (kb) 139 140Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 138.540 kb on + strand, within Rru_A0118at 138.622 kb on - strand, within Rru_A0118at 138.622 kb on - strand, within Rru_A0118at 139.001 kb on - strandat 139.001 kb on - strandat 139.118 kb on - strandat 139.146 kb on - strandat 139.146 kb on - strandat 139.148 kb on + strandat 139.148 kb on + strandat 139.148 kb on + strandat 139.149 kb on - strandat 139.149 kb on - strandat 139.149 kb on - strandat 139.149 kb on - strandat 139.149 kb on - strandat 139.150 kb on + strandat 139.151 kb on - strandat 139.383 kb on + strandat 139.383 kb on + strandat 139.570 kb on - strandat 139.570 kb on - strandat 139.570 kb on - strandat 139.671 kb on + strandat 140.024 kb on + strandat 140.024 kb on + strandat 140.045 kb on - strandat 140.154 kb on - strandat 140.157 kb on + strandat 140.237 kb on + strand, within Rru_A0120at 140.237 kb on + strand, within Rru_A0120

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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138,540 + Rru_A0118 0.46 +0.3
138,622 - Rru_A0118 0.54 -1.9
138,622 - Rru_A0118 0.54 -1.6
139,001 - -2.0
139,001 - -0.1
139,118 - -0.3
139,146 - -0.9
139,146 - -1.8
139,148 + -0.1
139,148 + +1.0
139,148 + +2.0
139,149 - -3.0
139,149 - -1.8
139,149 - +0.2
139,149 - +0.6
139,149 - +0.4
139,150 + -1.0
139,151 - -0.2
139,383 + +0.0
139,383 + -1.9
139,570 - -2.2
139,570 - +0.7
139,570 - +2.0
139,671 + +0.5
140,024 + +0.1
140,024 + +1.0
140,045 - -1.0
140,154 - +0.2
140,157 + +1.0
140,237 + Rru_A0120 0.16 -1.6
140,237 + Rru_A0120 0.16 +1.0

Or see this region's nucleotide sequence