Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0118 and Rru_A0119 are separated by 83 nucleotides Rru_A0119 and Rru_A0120 are separated by 669 nucleotides
Rru_A0118: Rru_A0118 - type II secretion system protein E (NCBI), at 138,055 to 139,101
_A0118
Rru_A0119: Rru_A0119 - Protein of unknown function DUF1328 (NCBI), at 139,185 to 139,355
_A0119
Rru_A0120: Rru_A0120 - chemotaxis sensory transducer (NCBI), at 140,025 to 141,362
_A0120
Position (kb)
139
140 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 138.540 kb on + strand, within Rru_A0118 at 138.622 kb on - strand, within Rru_A0118 at 138.622 kb on - strand, within Rru_A0118 at 139.001 kb on - strand at 139.001 kb on - strand at 139.118 kb on - strand at 139.146 kb on - strand at 139.146 kb on - strand at 139.148 kb on + strand at 139.148 kb on + strand at 139.148 kb on + strand at 139.149 kb on - strand at 139.149 kb on - strand at 139.149 kb on - strand at 139.149 kb on - strand at 139.149 kb on - strand at 139.150 kb on + strand at 139.151 kb on - strand at 139.383 kb on + strand at 139.383 kb on + strand at 139.570 kb on - strand at 139.570 kb on - strand at 139.570 kb on - strand at 139.671 kb on + strand at 140.024 kb on + strand at 140.024 kb on + strand at 140.045 kb on - strand at 140.154 kb on - strand at 140.157 kb on + strand at 140.237 kb on + strand, within Rru_A0120 at 140.237 kb on + strand, within Rru_A0120
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 138,540 + Rru_A0118 0.46 +0.3 138,622 - Rru_A0118 0.54 -1.9 138,622 - Rru_A0118 0.54 -1.6 139,001 - -2.0 139,001 - -0.1 139,118 - -0.3 139,146 - -0.9 139,146 - -1.8 139,148 + -0.1 139,148 + +1.0 139,148 + +2.0 139,149 - -3.0 139,149 - -1.8 139,149 - +0.2 139,149 - +0.6 139,149 - +0.4 139,150 + -1.0 139,151 - -0.2 139,383 + +0.0 139,383 + -1.9 139,570 - -2.2 139,570 - +0.7 139,570 - +2.0 139,671 + +0.5 140,024 + +0.1 140,024 + +1.0 140,045 - -1.0 140,154 - +0.2 140,157 + +1.0 140,237 + Rru_A0120 0.16 -1.6 140,237 + Rru_A0120 0.16 +1.0
Or see this region's nucleotide sequence