Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0113 and Rru_A0114 overlap by 1 nucleotides Rru_A0114 and Rru_A0115 are separated by 75 nucleotides
Rru_A0113: Rru_A0113 - type II secretion system protein E (NCBI), at 131,507 to 133,573
_A0113
Rru_A0114: Rru_A0114 - type II secretion system protein (NCBI), at 133,573 to 134,808
_A0114
Rru_A0115: Rru_A0115 - hypothetical protein (NCBI), at 134,884 to 136,362
_A0115
Position (kb) 133
134
135 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 132.869 kb on + strand, within Rru_A0113 at 132.870 kb on - strand, within Rru_A0113 at 132.886 kb on + strand, within Rru_A0113 at 132.886 kb on + strand, within Rru_A0113 at 132.887 kb on - strand, within Rru_A0113 at 132.935 kb on + strand, within Rru_A0113 at 133.109 kb on + strand, within Rru_A0113 at 133.110 kb on - strand, within Rru_A0113 at 133.359 kb on - strand, within Rru_A0113 at 133.396 kb on + strand at 133.396 kb on + strand at 133.583 kb on - strand at 133.588 kb on + strand at 134.162 kb on + strand, within Rru_A0114 at 134.780 kb on - strand at 134.780 kb on - strand at 134.811 kb on - strand at 134.830 kb on - strand at 134.830 kb on - strand at 134.851 kb on - strand at 134.852 kb on + strand at 134.852 kb on + strand at 134.852 kb on + strand at 134.852 kb on + strand at 134.852 kb on + strand at 134.853 kb on - strand at 134.853 kb on - strand at 134.853 kb on - strand at 134.860 kb on + strand at 134.860 kb on + strand at 134.860 kb on + strand at 134.861 kb on - strand at 134.861 kb on - strand at 135.556 kb on + strand, within Rru_A0115 at 135.556 kb on + strand, within Rru_A0115 at 135.556 kb on + strand, within Rru_A0115 at 135.557 kb on - strand, within Rru_A0115 at 135.557 kb on - strand, within Rru_A0115 at 135.785 kb on + strand, within Rru_A0115 at 135.785 kb on + strand, within Rru_A0115 at 135.786 kb on - strand, within Rru_A0115 at 135.786 kb on - strand, within Rru_A0115 at 135.786 kb on - strand, within Rru_A0115
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 132,869 + Rru_A0113 0.66 -1.2 132,870 - Rru_A0113 0.66 -0.5 132,886 + Rru_A0113 0.67 +0.1 132,886 + Rru_A0113 0.67 -1.2 132,887 - Rru_A0113 0.67 +0.9 132,935 + Rru_A0113 0.69 -0.6 133,109 + Rru_A0113 0.78 -0.8 133,110 - Rru_A0113 0.78 -2.0 133,359 - Rru_A0113 0.90 +1.0 133,396 + -1.6 133,396 + -1.5 133,583 - -0.6 133,588 + -2.9 134,162 + Rru_A0114 0.48 +2.3 134,780 - -0.2 134,780 - +0.1 134,811 - +0.4 134,830 - -0.0 134,830 - +0.4 134,851 - -1.7 134,852 + -1.0 134,852 + -1.3 134,852 + +0.4 134,852 + +0.0 134,852 + -2.3 134,853 - -4.0 134,853 - -0.5 134,853 - +1.2 134,860 + -0.9 134,860 + +0.1 134,860 + +0.4 134,861 - +1.6 134,861 - -0.1 135,556 + Rru_A0115 0.45 -0.1 135,556 + Rru_A0115 0.45 -0.1 135,556 + Rru_A0115 0.45 -2.2 135,557 - Rru_A0115 0.46 +2.9 135,557 - Rru_A0115 0.46 +0.4 135,785 + Rru_A0115 0.61 +0.4 135,785 + Rru_A0115 0.61 +2.6 135,786 - Rru_A0115 0.61 -0.9 135,786 - Rru_A0115 0.61 -2.7 135,786 - Rru_A0115 0.61 -0.3
Or see this region's nucleotide sequence