Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0107

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0105 and Rru_A0106 are separated by 94 nucleotidesRru_A0106 and Rru_A0107 overlap by 4 nucleotidesRru_A0107 and Rru_A0108 are separated by 14 nucleotidesRru_A0108 and Rru_A0109 are separated by 118 nucleotides Rru_A0105: Rru_A0105 - Penicillin-binding protein 1C (NCBI), at 123,031 to 125,151 _A0105 Rru_A0106: Rru_A0106 - TPR repeat, Tetratricopeptide TPR_4 (NCBI), at 125,246 to 126,043 _A0106 Rru_A0107: Rru_A0107 - MSHA biogenesis protein MshM (NCBI), at 126,040 to 126,951 _A0107 Rru_A0108: Rru_A0108 - Peptidase A24A, prepilin type IV (NCBI), at 126,966 to 127,592 _A0108 Rru_A0109: Rru_A0109 - type II and III secretion system protein (NCBI), at 127,711 to 129,354 _A0109 Position (kb) 126 127Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 125.161 kb on - strandat 125.177 kb on - strandat 125.625 kb on - strand, within Rru_A0106at 125.788 kb on - strand, within Rru_A0106at 125.788 kb on - strand, within Rru_A0106at 125.788 kb on - strand, within Rru_A0106at 126.219 kb on + strand, within Rru_A0107at 126.220 kb on - strand, within Rru_A0107at 126.226 kb on + strand, within Rru_A0107at 126.227 kb on - strand, within Rru_A0107at 126.227 kb on - strand, within Rru_A0107at 126.227 kb on - strand, within Rru_A0107at 126.227 kb on - strand, within Rru_A0107at 126.227 kb on - strand, within Rru_A0107at 126.640 kb on + strand, within Rru_A0107at 126.640 kb on + strand, within Rru_A0107at 126.641 kb on - strand, within Rru_A0107at 126.641 kb on - strand, within Rru_A0107at 126.641 kb on - strand, within Rru_A0107at 126.778 kb on + strand, within Rru_A0107at 127.149 kb on + strand, within Rru_A0108at 127.149 kb on + strand, within Rru_A0108at 127.149 kb on + strand, within Rru_A0108at 127.356 kb on + strand, within Rru_A0108at 127.656 kb on - strandat 127.661 kb on + strandat 127.674 kb on - strandat 127.674 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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125,161 - -3.0
125,177 - -0.3
125,625 - Rru_A0106 0.47 +0.3
125,788 - Rru_A0106 0.68 -0.2
125,788 - Rru_A0106 0.68 -0.2
125,788 - Rru_A0106 0.68 -1.3
126,219 + Rru_A0107 0.20 +4.0
126,220 - Rru_A0107 0.20 +4.0
126,226 + Rru_A0107 0.20 +2.0
126,227 - Rru_A0107 0.21 +4.6
126,227 - Rru_A0107 0.21 +5.9
126,227 - Rru_A0107 0.21 +4.7
126,227 - Rru_A0107 0.21 +2.3
126,227 - Rru_A0107 0.21 +3.8
126,640 + Rru_A0107 0.66 +3.3
126,640 + Rru_A0107 0.66 +2.8
126,641 - Rru_A0107 0.66 +3.1
126,641 - Rru_A0107 0.66 +4.3
126,641 - Rru_A0107 0.66 +3.9
126,778 + Rru_A0107 0.81 +1.0
127,149 + Rru_A0108 0.29 -0.5
127,149 + Rru_A0108 0.29 -1.3
127,149 + Rru_A0108 0.29 -1.6
127,356 + Rru_A0108 0.62 +1.0
127,656 - -2.4
127,661 + -0.9
127,674 - -2.2
127,674 - +1.6

Or see this region's nucleotide sequence