Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0074

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0072 and Rru_A0073 are separated by 412 nucleotidesRru_A0073 and Rru_A0074 are separated by 116 nucleotidesRru_A0074 and Rru_A0075 overlap by 4 nucleotidesRru_A0075 and Rru_A0076 are separated by 155 nucleotides Rru_A0072: Rru_A0072 - chaperone protein Hsp90 (NCBI), at 83,004 to 84,884 _A0072 Rru_A0073: Rru_A0073 - ribosomal subunit interface protein, putative (NCBI), at 85,297 to 85,677 _A0073 Rru_A0074: Rru_A0074 - Helicase-like (NCBI), at 85,794 to 88,994 _A0074 Rru_A0075: Rru_A0075 - RNA-binding S4 (NCBI), at 88,991 to 89,425 _A0075 Rru_A0076: Rru_A0076 - Protein of unknown function DUF1332 (NCBI), at 89,581 to 90,036 _A0076 Position (kb) 85 86 87 88 89Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 85.072 kb on + strandat 85.079 kb on - strandat 85.151 kb on + strandat 85.271 kb on + strandat 85.271 kb on + strandat 85.271 kb on + strandat 85.272 kb on - strandat 85.272 kb on - strandat 85.403 kb on + strand, within Rru_A0073at 85.404 kb on - strand, within Rru_A0073at 85.438 kb on - strand, within Rru_A0073at 85.458 kb on + strand, within Rru_A0073at 85.458 kb on + strand, within Rru_A0073at 85.459 kb on - strand, within Rru_A0073at 85.621 kb on - strand, within Rru_A0073at 85.675 kb on + strandat 85.675 kb on + strandat 85.759 kb on + strandat 86.023 kb on - strandat 86.023 kb on - strandat 86.023 kb on - strandat 86.259 kb on + strand, within Rru_A0074at 86.259 kb on + strand, within Rru_A0074at 86.259 kb on + strand, within Rru_A0074at 86.259 kb on + strand, within Rru_A0074at 86.259 kb on + strand, within Rru_A0074at 86.331 kb on + strand, within Rru_A0074at 86.332 kb on - strand, within Rru_A0074at 86.332 kb on - strand, within Rru_A0074at 86.332 kb on - strand, within Rru_A0074at 86.427 kb on + strand, within Rru_A0074at 86.428 kb on - strand, within Rru_A0074at 86.448 kb on + strand, within Rru_A0074at 86.448 kb on + strand, within Rru_A0074at 86.449 kb on - strand, within Rru_A0074at 86.449 kb on - strand, within Rru_A0074at 86.597 kb on + strand, within Rru_A0074at 86.597 kb on + strand, within Rru_A0074at 86.598 kb on - strand, within Rru_A0074at 86.652 kb on - strand, within Rru_A0074at 86.969 kb on - strand, within Rru_A0074at 87.082 kb on + strand, within Rru_A0074at 87.090 kb on + strand, within Rru_A0074at 87.090 kb on + strand, within Rru_A0074at 87.090 kb on + strand, within Rru_A0074at 87.090 kb on + strand, within Rru_A0074at 87.090 kb on + strand, within Rru_A0074at 87.090 kb on + strand, within Rru_A0074at 87.090 kb on + strand, within Rru_A0074at 87.090 kb on + strand, within Rru_A0074at 87.090 kb on + strand, within Rru_A0074at 87.090 kb on + strand, within Rru_A0074at 87.090 kb on + strand, within Rru_A0074at 87.091 kb on - strand, within Rru_A0074at 87.091 kb on - strand, within Rru_A0074at 87.091 kb on - strand, within Rru_A0074at 87.091 kb on - strand, within Rru_A0074at 87.091 kb on - strand, within Rru_A0074at 87.091 kb on - strand, within Rru_A0074at 87.091 kb on - strand, within Rru_A0074at 87.154 kb on + strand, within Rru_A0074at 87.154 kb on + strand, within Rru_A0074at 87.978 kb on + strand, within Rru_A0074at 87.978 kb on + strand, within Rru_A0074at 87.979 kb on - strand, within Rru_A0074at 88.029 kb on - strand, within Rru_A0074at 88.029 kb on - strand, within Rru_A0074at 88.029 kb on - strand, within Rru_A0074at 88.029 kb on - strand, within Rru_A0074at 88.029 kb on - strand, within Rru_A0074at 88.576 kb on - strand, within Rru_A0074at 88.867 kb on - strandat 88.911 kb on + strandat 88.911 kb on + strandat 88.912 kb on - strandat 88.955 kb on + strandat 88.956 kb on - strandat 88.972 kb on + strandat 88.972 kb on + strandat 88.973 kb on - strandat 89.074 kb on + strand, within Rru_A0075at 89.074 kb on + strand, within Rru_A0075at 89.075 kb on - strand, within Rru_A0075at 89.087 kb on + strand, within Rru_A0075at 89.088 kb on - strand, within Rru_A0075at 89.294 kb on + strand, within Rru_A0075at 89.295 kb on - strand, within Rru_A0075at 89.423 kb on + strandat 89.467 kb on + strandat 89.467 kb on + strandat 89.468 kb on - strandat 89.468 kb on - strandat 89.580 kb on + strandat 89.580 kb on + strandat 89.580 kb on + strandat 89.580 kb on + strandat 89.580 kb on + strandat 89.580 kb on + strandat 89.581 kb on - strandat 89.828 kb on - strand, within Rru_A0076at 89.863 kb on + strand, within Rru_A0076at 89.908 kb on + strand, within Rru_A0076at 89.908 kb on + strand, within Rru_A0076at 89.909 kb on - strand, within Rru_A0076at 89.909 kb on - strand, within Rru_A0076at 89.909 kb on - strand, within Rru_A0076at 89.971 kb on + strand, within Rru_A0076at 89.972 kb on - strand, within Rru_A0076at 89.972 kb on - strand, within Rru_A0076at 89.972 kb on - strand, within Rru_A0076at 89.972 kb on - strand, within Rru_A0076at 89.972 kb on - strand, within Rru_A0076

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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85,072 + -4.0
85,079 - -1.4
85,151 + -0.1
85,271 + -0.2
85,271 + +3.4
85,271 + -0.3
85,272 - -1.0
85,272 - -0.1
85,403 + Rru_A0073 0.28 +0.4
85,404 - Rru_A0073 0.28 -0.8
85,438 - Rru_A0073 0.37 -1.3
85,458 + Rru_A0073 0.42 -0.1
85,458 + Rru_A0073 0.42 -1.0
85,459 - Rru_A0073 0.43 -0.6
85,621 - Rru_A0073 0.85 -0.2
85,675 + -3.2
85,675 + -2.2
85,759 + -0.3
86,023 - -1.0
86,023 - +1.0
86,023 - -3.2
86,259 + Rru_A0074 0.15 +0.4
86,259 + Rru_A0074 0.15 -1.0
86,259 + Rru_A0074 0.15 +1.0
86,259 + Rru_A0074 0.15 -0.8
86,259 + Rru_A0074 0.15 +0.8
86,331 + Rru_A0074 0.17 -2.2
86,332 - Rru_A0074 0.17 -3.8
86,332 - Rru_A0074 0.17 +0.4
86,332 - Rru_A0074 0.17 -0.2
86,427 + Rru_A0074 0.20 -2.4
86,428 - Rru_A0074 0.20 -0.8
86,448 + Rru_A0074 0.20 +0.8
86,448 + Rru_A0074 0.20 +0.4
86,449 - Rru_A0074 0.20 -0.8
86,449 - Rru_A0074 0.20 -0.9
86,597 + Rru_A0074 0.25 -1.2
86,597 + Rru_A0074 0.25 +0.9
86,598 - Rru_A0074 0.25 -1.5
86,652 - Rru_A0074 0.27 +1.1
86,969 - Rru_A0074 0.37 -1.3
87,082 + Rru_A0074 0.40 -2.8
87,090 + Rru_A0074 0.40 +2.0
87,090 + Rru_A0074 0.40 +0.0
87,090 + Rru_A0074 0.40 +2.0
87,090 + Rru_A0074 0.40 +1.6
87,090 + Rru_A0074 0.40 +0.6
87,090 + Rru_A0074 0.40 -0.4
87,090 + Rru_A0074 0.40 +0.4
87,090 + Rru_A0074 0.40 -0.6
87,090 + Rru_A0074 0.40 -0.8
87,090 + Rru_A0074 0.40 -0.8
87,090 + Rru_A0074 0.40 -0.6
87,091 - Rru_A0074 0.41 -1.6
87,091 - Rru_A0074 0.41 -1.3
87,091 - Rru_A0074 0.41 -2.2
87,091 - Rru_A0074 0.41 -0.8
87,091 - Rru_A0074 0.41 -0.3
87,091 - Rru_A0074 0.41 -0.8
87,091 - Rru_A0074 0.41 -1.0
87,154 + Rru_A0074 0.42 +0.2
87,154 + Rru_A0074 0.42 -1.4
87,978 + Rru_A0074 0.68 +1.6
87,978 + Rru_A0074 0.68 -1.4
87,979 - Rru_A0074 0.68 -2.2
88,029 - Rru_A0074 0.70 +0.3
88,029 - Rru_A0074 0.70 -0.3
88,029 - Rru_A0074 0.70 -2.8
88,029 - Rru_A0074 0.70 -0.6
88,029 - Rru_A0074 0.70 -0.5
88,576 - Rru_A0074 0.87 -1.0
88,867 - +0.2
88,911 + -1.6
88,911 + +1.0
88,912 - +1.0
88,955 + -3.1
88,956 - -1.4
88,972 + +0.4
88,972 + -1.8
88,973 - +0.0
89,074 + Rru_A0075 0.19 -2.4
89,074 + Rru_A0075 0.19 -1.6
89,075 - Rru_A0075 0.19 +0.5
89,087 + Rru_A0075 0.22 -1.0
89,088 - Rru_A0075 0.22 -3.2
89,294 + Rru_A0075 0.70 -2.3
89,295 - Rru_A0075 0.70 -2.6
89,423 + -1.8
89,467 + -1.9
89,467 + -2.8
89,468 - +0.3
89,468 - +0.4
89,580 + -0.3
89,580 + -0.0
89,580 + +2.0
89,580 + +0.4
89,580 + +1.0
89,580 + +1.0
89,581 - +2.7
89,828 - Rru_A0076 0.54 -2.9
89,863 + Rru_A0076 0.62 +1.8
89,908 + Rru_A0076 0.72 +3.6
89,908 + Rru_A0076 0.72 -1.2
89,909 - Rru_A0076 0.72 +1.8
89,909 - Rru_A0076 0.72 -0.6
89,909 - Rru_A0076 0.72 +0.9
89,971 + Rru_A0076 0.86 -2.8
89,972 - Rru_A0076 0.86 +3.3
89,972 - Rru_A0076 0.86 +2.0
89,972 - Rru_A0076 0.86 +0.6
89,972 - Rru_A0076 0.86 +0.8
89,972 - Rru_A0076 0.86 +2.8

Or see this region's nucleotide sequence